SCOPe 2.08: Protein: HIV capsid protein, dimerisation domain

Lineage for Protein: HIV capsid protein, dimerisation domain

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
4 helices, bundle; helix 3 is shorter than others; up-and-down
Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families)
Family a.28.3.1: Retrovirus capsid protein C-terminal domain [47354] (5 proteins)
Protein HIV capsid protein, dimerisation domain [47359] (3 species)

Species:

Human immunodeficiency virus 1 [TaxId:11676] [361175] (4 PDB entries)
1. Domains for 3ds2:
  1. Domain d3ds2a_: 3ds2 A: [209283]
    automated match to d1baja_
    mutant
  2. Domain d3ds2b_: 3ds2 B: [209284]
    automated match to d1baja_
    mutant
2. Domains for 3ds5:
  1. Domain d3ds5a_: 3ds5 A: [209285]
    automated match to d1baja_
    mutant
  2. Domain d3ds5b_: 3ds5 B: [209286]
    automated match to d1baja_
    mutant
  3. Domain d3ds5c_: 3ds5 C: [209287]
    automated match to d1baja_
    mutant
  4. Domain d3ds5d_: 3ds5 D: [209288]
    automated match to d1baja_
    mutant
3. Domains for 6n3j:
  1. Domain d6n3ja_: 6n3j A: [361229]
    automated match to d5teob_
  2. Domain d6n3jb_: 6n3j B: [361181]
    automated match to d5teob_
  3. Domain d6n3jc_: 6n3j C: [361176]
    automated match to d5teob_
  4. Domain d6n3jd_: 6n3j D: [361204]
    automated match to d5teob_
  5. Domain d6n3je_: 6n3j E: [361191]
    automated match to d5teob_
  6. Domain d6n3jf_: 6n3j F: [361192]
    automated match to d5teob_
4. Domains for 6n3u:
  1. Domain d6n3ua_: 6n3u A: [361222]
    automated match to d5teob_
  2. Domain d6n3ub_: 6n3u B: [361190]
    automated match to d5teob_
  3. Domain d6n3uc_: 6n3u C: [361189]
    automated match to d5teob_
  4. Domain d6n3ud_: 6n3u D: [361243]
    automated match to d5teob_
  5. Domain d6n3ue_: 6n3u E: [361182]
    automated match to d5teob_
  6. Domain d6n3uf_: 6n3u F: [361207]
    automated match to d5teob_
Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [346174] (1 PDB entry)
- Domains for 5teo:
  1. Domain d5teoa_: 5teo A: [339627]
    automated match to d2xt1a_
  2. Domain d5teob_: 5teo B: [339615]
    automated match to d2xt1a_
Human immunodeficiency virus type 1 [TaxId:11676] [47360] (13 PDB entries)
1. Domain for 1a43:
  - Domain d1a43a_: 1a43 A: [16955]
2. Domain for 1a8o:
  - Domain d1a8oa_: 1a8o A: [16953]
3. Domain for 1aum:
  - Domain d1auma_: 1aum A: [16957]
4. Domain for 1baj:
  - Domain d1baja_: 1baj A: [16954]
    extended at the C-terminus to include a 14-residue GAG p2 domain
5. Domain for 1e6j:
  - Domain d1e6jp1: 1e6j P:148-220 [16956]
    Other proteins in same PDB: d1e6jh1, d1e6jh2, d1e6jl1, d1e6jl2, d1e6jp2
6. Domain for 2jo0:
  - Domain d2jo0a1: 2jo0 A:2-87 [242253]
    Other proteins in same PDB: d2jo0a2
    automated match to d2xt1a_
7. Domain for 2jyg:
  - Domain d2jyga_: 2jyg A: [242312]
    automated match to d2xt1a_
    mutant
8. Domain for 2jyl:
  - Domain d2jyla_: 2jyl A: [242313]
    automated match to d2xt1a_
    mutant
9. Domain for 2k1c:
  - Domain d2k1ca_: 2k1c A: [304149]
    automated match to d2l6ea_
    protein/DNA complex; protein/RNA complex
10. Domain for 2ont:
  - Domain d2onta_: 2ont A: [205342]
    automated match to d1baja_
11. Domain for 3dik:
  - Domain d3dika1: 3dik A:148-219 [157751]
    Other proteins in same PDB: d3dika2
    automatically matched to d1e6jp1
12. Domains for 3dph:
  1. Domain d3dpha_: 3dph A: [209254]
    automated match to d1baja_
    mutant
  2. Domain d3dphb_: 3dph B: [209255]
    automated match to d1baja_
    mutant
13. Domains for 4ipy:
  1. Domain d4ipya_: 4ipy A: [228330]
    automated match to d1a43a_
    complexed with edo
  2. Domain d4ipyb_: 4ipy B: [228332]
    automated match to d1a43a_
    complexed with edo
  3. Domain d4ipyc_: 4ipy C: [228333]
    automated match to d1a43a_
    complexed with edo
  4. Domain d4ipyd_: 4ipy D: [228331]
    automated match to d1a43a_
    complexed with edo

More info for Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain

Timeline for Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain:

Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain first appeared (with stable ids) in SCOP 1.55
Protein HIV capsid protein, dimerisation domain from a.28.3.1: Retrovirus capsid protein C-terminal domain appears in SCOPe 2.07