SCOPe 2.07: Family a.28.3.1: Retrovirus capsid protein C-terminal domain

Lineage for Family a.28.3.1: Retrovirus capsid protein C-terminal domain

1. Root: SCOPe 2.07

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
   4 helices, bundle; helix 3 is shorter than others; up-and-down

4. Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families)

5. Family a.28.3.1: Retrovirus capsid protein C-terminal domain [47354] (5 proteins)

Proteins:

1. EIAV capsid protein p26 [47355] (1 species)

   • Species Equine infectious anemia virus [TaxId:11665] [47356] (2 PDB entries)

2. HIV capsid protein, dimerisation domain [47359] (3 species)

   1. Species Human immunodeficiency virus 1 [TaxId:11676] [361175] (2 PDB entries)

   2. Species Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [346174] (1 PDB entry)

   3. Species Human immunodeficiency virus type 1 [TaxId:11676] [47360] (15 PDB entries)

3. HTLV-I capsid protein [47357] (1 species)

   • Species Human T-cell leukemia virus type 1 [TaxId:11908] [47358] (1 PDB entry)

4. RSV capsid protein [47361] (1 species)

   • Species Rous sarcoma virus [TaxId:11886] [47362] (2 PDB entries)

5. automated matches [226861] (4 species)
   not a true protein

   1. Species Hiv-1 m:b_hxb2r [TaxId:11706] [255365] (1 PDB entry)

   2. Species Human immunodeficiency virus 1 [TaxId:11676] [224990] (6 PDB entries)

   3. Species Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [355694] (1 PDB entry)

   4. Species Rous sarcoma virus [TaxId:11888] [225677] (7 PDB entries)

More info for Family a.28.3.1: Retrovirus capsid protein C-terminal domain

Timeline for Family a.28.3.1: Retrovirus capsid protein C-terminal domain:

• Family a.28.3.1: Retrovirus capsid protein C-terminal domain first appeared (with stable ids) in SCOP 1.55
  
• Family a.28.3.1: Retrovirus capsid protein C-terminal domain appears in SCOPe 2.06
  
• Family a.28.3.1: Retrovirus capsid protein C-terminal domain appears in the current release, SCOPe 2.08