SCOPe 2.06: Family a.25.1.2: Ribonucleotide reductase-like

Lineage for Family a.25.1.2: Ribonucleotide reductase-like

1. Root: SCOPe 2.06

2. Class a: All alpha proteins [46456] (289 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
   core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families)
   contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 proteins)

Proteins:

1. delta 9-stearoyl-acyl carrier protein desaturase [47261] (1 species)

   • Species Castor bean (Ricinus communis) [TaxId:3988] [47262] (5 PDB entries)

2. Methane monooxygenase hydrolase alpha subunit [88789] (2 species)

   1. Species Methylococcus capsulatus [TaxId:414] [88790] (26 PDB entries)

   2. Species Methylosinus trichosporium [TaxId:426] [88791] (2 PDB entries)

3. Methane monooxygenase hydrolase beta subunit [88792] (2 species)

   1. Species Methylococcus capsulatus [TaxId:414] [88793] (27 PDB entries)

   2. Species Methylosinus trichosporium [TaxId:426] [88794] (2 PDB entries)

4. Phenylacetic acid degradation protein PaaC [101136] (1 species)

   • Species Escherichia coli [TaxId:562] [101137] (1 PDB entry)

5. Possible acyl-[acyl-carrier protein] desaturase [140442] (1 species)

   • Species Mycobacterium tuberculosis [TaxId:1773] [140443] (1 PDB entry)
     Uniprot O53442 8-274

6. Ribonucleotide reductase R2 [47257] (10 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId:4932] [88795] (2 PDB entries)
      Uniprot P09938

   2. Species Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId:4932] [88796] (2 PDB entries)
      Uniprot P49723

   3. Species Chlamydia trachomatis [TaxId:813] [109786] (1 PDB entry)
      Uniprot O84835

   4. Species Corynebacterium ammoniagenes [TaxId:1697] [69006] (6 PDB entries)

   5. Species Escherichia coli [TaxId:562] [47258] (24 PDB entries)

   6. Species Escherichia coli [TaxId:745156] [318807] (1 PDB entry)

   7. Species Human (Homo sapiens), RRM2 [TaxId:9606] [158401] (1 PDB entry)
      Uniprot P31350 66-350

   8. Species Mouse (Mus musculus) [TaxId:10090] [47260] (5 PDB entries)
      Uniprot P11157

   9. Species Mycobacterium tuberculosis [TaxId:1773] [109787] (1 PDB entry)
      Uniprot Q50549 10-291

   10. Species Salmonella typhimurium [TaxId:90371] [47259] (3 PDB entries)

7. Toluene, o-xylene monooxygenase oxygenase subunit TouA [109788] (2 species)
   contains the TouB(TmoB)-binding YHS (sub)domain (Pfam PF04945) in the C-terminal part (401-450)

   1. Species Pseudomonas sp. [TaxId:320855] [189497] (11 PDB entries)

   2. Species Pseudomonas stutzeri [TaxId:316] [109789] (6 PDB entries)
      Uniprot O87798

8. Toluene, o-xylene monooxygenase oxygenase subunit TouE [109790] (2 species)

   1. Species Pseudomonas sp. [TaxId:320855] [189498] (11 PDB entries)

   2. Species Pseudomonas stutzeri [TaxId:316] [109791] (6 PDB entries)
      Uniprot O87802

9. automated matches [190435] (11 species)
   not a true protein

   1. Species Castor bean (Ricinus communis) [TaxId:3988] [187330] (3 PDB entries)

   2. Species Chlamydia trachomatis [TaxId:813] [225098] (5 PDB entries)

   3. Species Escherichia coli K-12 [TaxId:83333] [255975] (6 PDB entries)

   4. Species Escherichia coli [TaxId:511145] [189613] (7 PDB entries)

   5. Species Escherichia coli [TaxId:745156] [318697] (2 PDB entries)

   6. Species Escherichia coli [TaxId:83334] [318744] (2 PDB entries)

   7. Species Hedera helix [TaxId:4052] [187347] (1 PDB entry)

   8. Species Human (Homo sapiens) [TaxId:9606] [193902] (7 PDB entries)

   9. Species Methylococcus capsulatus [TaxId:243233] [226584] (1 PDB entry)

   10. Species Plasmodium vivax [TaxId:5855] [226817] (1 PDB entry)

   11. Species Pseudomonas mendocina [TaxId:300] [188695] (20 PDB entries)

More info for Family a.25.1.2: Ribonucleotide reductase-like

Timeline for Family a.25.1.2: Ribonucleotide reductase-like:

• Family a.25.1.2: Ribonucleotide reductase-like first appeared (with stable ids) in SCOP 1.55
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in SCOPe 2.05
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in SCOPe 2.07
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in the current release, SCOPe 2.08