SCOPe 2.01: Family a.25.1.2: Ribonucleotide reductase-like

Lineage for Family a.25.1.2: Ribonucleotide reductase-like

1. Root: SCOPe 2.01

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
   core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families)
   contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.2: Ribonucleotide reductase-like [47253] (9 proteins)

Proteins:

1. delta 9-stearoyl-acyl carrier protein desaturase [47261] (1 species)

   • Species Castor bean (Ricinus communis) [TaxId:3988] [47262] (5 PDB entries)

2. Methane monooxygenase hydrolase alpha subunit [88789] (2 species)

   1. Species Methylococcus capsulatus [TaxId:414] [88790] (26 PDB entries)

   2. Species Methylosinus trichosporium [TaxId:426] [88791] (2 PDB entries)

3. Methane monooxygenase hydrolase beta subunit [88792] (2 species)

   1. Species Methylococcus capsulatus [TaxId:414] [88793] (26 PDB entries)

   2. Species Methylosinus trichosporium [TaxId:426] [88794] (2 PDB entries)

4. Phenylacetic acid degradation protein PaaC [101136] (1 species)

   • Species Escherichia coli [TaxId:562] [101137] (1 PDB entry)

5. Possible acyl-[acyl-carrier protein] desaturase [140442] (1 species)

   • Species Mycobacterium tuberculosis [TaxId:1773] [140443] (1 PDB entry)
     Uniprot O53442 8-274

6. Ribonucleotide reductase R2 [47257] (9 species)

   1. Species Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId:4932] [88795] (2 PDB entries)
      Uniprot P09938

   2. Species Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId:4932] [88796] (2 PDB entries)
      Uniprot P49723

   3. Species Chlamydia trachomatis [TaxId:813] [109786] (1 PDB entry)
      Uniprot O84835

   4. Species Corynebacterium ammoniagenes [TaxId:1697] [69006] (6 PDB entries)

   5. Species Escherichia coli [TaxId:562] [47258] (23 PDB entries)

   6. Species Human (Homo sapiens), RRM2 [TaxId:9606] [158401] (1 PDB entry)
      Uniprot P31350 66-350

   7. Species Mouse (Mus musculus) [TaxId:10090] [47260] (5 PDB entries)
      Uniprot P11157

   8. Species Mycobacterium tuberculosis [TaxId:1773] [109787] (1 PDB entry)
      Uniprot Q50549 10-291

   9. Species Salmonella typhimurium [TaxId:90371] [47259] (3 PDB entries)

7. Toluene, o-xylene monooxygenase oxygenase subunit TouA [109788] (2 species)
   contains the TouB(TmoB)-binding YHS (sub)domain (Pfam PF04945) in the C-terminal part (401-450)

   1. Species Pseudomonas sp. [TaxId:320855] [189497] (10 PDB entries)

   2. Species Pseudomonas stutzeri [TaxId:316] [109789] (6 PDB entries)
      Uniprot O87798

8. Toluene, o-xylene monooxygenase oxygenase subunit TouE [109790] (2 species)

   1. Species Pseudomonas sp. [TaxId:320855] [189498] (10 PDB entries)

   2. Species Pseudomonas stutzeri [TaxId:316] [109791] (6 PDB entries)
      Uniprot O87802

9. automated matches [190435] (4 species)
   not a true protein

   1. Species Castor bean (Ricinus communis) [TaxId:3988] [187330] (1 PDB entry)

   2. Species Escherichia coli [TaxId:511145] [189613] (6 PDB entries)

   3. Species Hedera helix [TaxId:4052] [187347] (1 PDB entry)

   4. Species Pseudomonas mendocina [TaxId:300] [188695] (12 PDB entries)

More info for Family a.25.1.2: Ribonucleotide reductase-like

Timeline for Family a.25.1.2: Ribonucleotide reductase-like:

• Family a.25.1.2: Ribonucleotide reductase-like first appeared (with stable ids) in SCOP 1.55
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in SCOP 1.75
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in SCOPe 2.02
  
• Family a.25.1.2: Ribonucleotide reductase-like appears in the current release, SCOPe 2.08