SCOP 1.71: Protein: Dodecameric ferritin homolog

Lineage for Protein: Dodecameric ferritin homolog

Root: SCOP 1.71
Class a: All alpha proteins [46456] (226 folds)
Fold a.25: Ferritin-like [47239] (2 superfamilies)
core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
Superfamily a.25.1: Ferritin-like [47240] (3 families)
contains bimetal-ion centre in the middle of the bundle
Family a.25.1.1: Ferritin [47241] (7 proteins)
Protein Dodecameric ferritin homolog [47250] (10 species)

Species:

Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
- Domains for 1o9r:
  1. Domain d1o9ra_: 1o9r A: [86706]
  2. Domain d1o9rb_: 1o9r B: [86707]
  3. Domain d1o9rc_: 1o9r C: [86708]
  4. Domain d1o9rd_: 1o9r D: [86709]
  5. Domain d1o9re_: 1o9r E: [86710]
  6. Domain d1o9rf_: 1o9r F: [86711]
    complexed with egl, fe, tmn
Archaeon Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
1. Domains for 1moj:
  1. Domain d1moja_: 1moj A: [91367]
  2. Domain d1mojb_: 1moj B: [91368]
  3. Domain d1mojc_: 1moj C: [91369]
  4. Domain d1mojd_: 1moj D: [91370]
    complexed with fe, mg, na
2. Domains for 1tjo:
  1. Domain d1tjoa_: 1tjo A: [112461]
  2. Domain d1tjob_: 1tjo B: [112462]
  3. Domain d1tjoc_: 1tjo C: [112463]
  4. Domain d1tjod_: 1tjo D: [112464]
    complexed with fe, mg, na, so4
3. Domains for 1tk6:
  1. Domain d1tk6a_: 1tk6 A: [112466]
  2. Domain d1tk6b_: 1tk6 B: [112467]
  3. Domain d1tk6c_: 1tk6 C: [112468]
  4. Domain d1tk6d_: 1tk6 D: [112469]
    complexed with fe, mg, na, so4
4. Domains for 1tko:
  1. Domain d1tkoa_: 1tko A: [112474]
  2. Domain d1tkob_: 1tko B: [112475]
  3. Domain d1tkoc_: 1tko C: [112476]
  4. Domain d1tkod_: 1tko D: [112477]
    complexed with fe, na, so4
5. Domains for 1tkp:
  1. Domain d1tkpa_: 1tkp A: [112478]
  2. Domain d1tkpb_: 1tkp B: [112479]
  3. Domain d1tkpc_: 1tkp C: [112480]
  4. Domain d1tkpd_: 1tkp D: [112481]
    complexed with fe, na, so4
Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
- Domains for 1ji5:
  1. Domain d1ji5a_: 1ji5 A: [71678]
  2. Domain d1ji5b_: 1ji5 B: [71679]
  3. Domain d1ji5c_: 1ji5 C: [71680]
  4. Domain d1ji5d_: 1ji5 D: [71681]
    complexed with mpd, of3
Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
- Domains for 1jig:
  1. Domain d1jiga_: 1jig A: [71685]
  2. Domain d1jigb_: 1jig B: [71686]
  3. Domain d1jigc_: 1jig C: [71687]
  4. Domain d1jigd_: 1jig D: [71688]
    complexed with of3
Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
- Domains for 1n1q:
  1. Domain d1n1qa_: 1n1q A: [85260]
  2. Domain d1n1qb_: 1n1q B: [85261]
  3. Domain d1n1qc_: 1n1q C: [85262]
  4. Domain d1n1qd_: 1n1q D: [85263]
    complexed with feo
Escherichia coli, Dps [TaxId:562] [47251] (7 PDB entries)
ferritin homolog that binds to and protects DNA
1. Domains for 1dps:
  1. Domain d1dpsa_: 1dps A: [16716]
  2. Domain d1dpsb_: 1dps B: [16717]
  3. Domain d1dpsc_: 1dps C: [16718]
  4. Domain d1dpsd_: 1dps D: [16719]
  5. Domain d1dpse_: 1dps E: [16720]
  6. Domain d1dpsf_: 1dps F: [16721]
  7. Domain d1dpsg_: 1dps G: [16722]
  8. Domain d1dpsh_: 1dps H: [16723]
  9. Domain d1dpsi_: 1dps I: [16724]
  10. Domain d1dpsj_: 1dps J: [16725]
  11. Domain d1dpsk_: 1dps K: [16726]
  12. Domain d1dpsl_: 1dps L: [16727]
    complexed with na; mutant
2. Domains for 1f30:
  1. Domain d1f30a_: 1f30 A: [83216]
  2. Domain d1f30b_: 1f30 B: [83217]
  3. Domain d1f30c_: 1f30 C: [83218]
  4. Domain d1f30d_: 1f30 D: [83219]
  5. Domain d1f30e_: 1f30 E: [83220]
  6. Domain d1f30f_: 1f30 F: [83221]
  7. Domain d1f30g_: 1f30 G: [83222]
  8. Domain d1f30h_: 1f30 H: [83223]
  9. Domain d1f30i_: 1f30 I: [83224]
  10. Domain d1f30j_: 1f30 J: [83225]
  11. Domain d1f30k_: 1f30 K: [83226]
  12. Domain d1f30l_: 1f30 L: [83227]
    complexed with trs, zn
3. Domains for 1f33:
  1. Domain d1f33a_: 1f33 A: [83228]
  2. Domain d1f33b_: 1f33 B: [83229]
  3. Domain d1f33c_: 1f33 C: [83230]
  4. Domain d1f33d_: 1f33 D: [83231]
  5. Domain d1f33e_: 1f33 E: [83232]
  6. Domain d1f33f_: 1f33 F: [83233]
  7. Domain d1f33g_: 1f33 G: [83234]
  8. Domain d1f33h_: 1f33 H: [83235]
  9. Domain d1f33i_: 1f33 I: [83236]
  10. Domain d1f33j_: 1f33 J: [83237]
  11. Domain d1f33k_: 1f33 K: [83238]
  12. Domain d1f33l_: 1f33 L: [83239]
    complexed with trs
4. Domains for 1jre:
  1. Domain d1jrea_: 1jre A: [84193]
  2. Domain d1jreb_: 1jre B: [84194]
  3. Domain d1jrec_: 1jre C: [84195]
  4. Domain d1jred_: 1jre D: [84196]
  5. Domain d1jree_: 1jre E: [84197]
  6. Domain d1jref_: 1jre F: [84198]
  7. Domain d1jreg_: 1jre G: [84199]
  8. Domain d1jreh_: 1jre H: [84200]
  9. Domain d1jrei_: 1jre I: [84201]
  10. Domain d1jrej_: 1jre J: [84202]
  11. Domain d1jrek_: 1jre K: [84203]
  12. Domain d1jrel_: 1jre L: [84204]
    complexed with cd, trs; mutant
5. Domains for 1jts:
  1. Domain d1jtsa_: 1jts A: [84206]
  2. Domain d1jtsb_: 1jts B: [84207]
  3. Domain d1jtsc_: 1jts C: [84208]
  4. Domain d1jtsd_: 1jts D: [84209]
  5. Domain d1jtse_: 1jts E: [84210]
  6. Domain d1jtsf_: 1jts F: [84211]
  7. Domain d1jtsg_: 1jts G: [84212]
  8. Domain d1jtsh_: 1jts H: [84213]
  9. Domain d1jtsi_: 1jts I: [84214]
  10. Domain d1jtsj_: 1jts J: [84215]
  11. Domain d1jtsk_: 1jts K: [84216]
  12. Domain d1jtsl_: 1jts L: [84217]
  13. Domain d1jtsm_: 1jts M: [84218]
  14. Domain d1jtsn_: 1jts N: [84219]
  15. Domain d1jtso_: 1jts O: [84220]
  16. Domain d1jtsp_: 1jts P: [84221]
  17. Domain d1jtsq_: 1jts Q: [84222]
  18. Domain d1jtsr_: 1jts R: [84223]
  19. Domain d1jtss_: 1jts S: [84224]
  20. Domain d1jtst_: 1jts T: [84225]
  21. Domain d1jtsu_: 1jts U: [84226]
  22. Domain d1jtsv_: 1jts V: [84227]
  23. Domain d1jtsw_: 1jts W: [84228]
  24. Domain d1jtsx_: 1jts X: [84229]
    complexed with trs; mutant
6. Domains for 1l8h:
  1. Domain d1l8ha_: 1l8h A: [84538]
  2. Domain d1l8hb_: 1l8h B: [84539]
  3. Domain d1l8hc_: 1l8h C: [84540]
  4. Domain d1l8hd_: 1l8h D: [84541]
  5. Domain d1l8he_: 1l8h E: [84542]
  6. Domain d1l8hf_: 1l8h F: [84543]
  7. Domain d1l8hg_: 1l8h G: [84544]
  8. Domain d1l8hh_: 1l8h H: [84545]
  9. Domain d1l8hi_: 1l8h I: [84546]
  10. Domain d1l8hj_: 1l8h J: [84547]
  11. Domain d1l8hk_: 1l8h K: [84548]
  12. Domain d1l8hl_: 1l8h L: [84549]
    complexed with k, trs; mutant
7. Domains for 1l8i:
  1. Domain d1l8ia_: 1l8i A: [84550]
  2. Domain d1l8ib_: 1l8i B: [84551]
  3. Domain d1l8ic_: 1l8i C: [84552]
  4. Domain d1l8id_: 1l8i D: [84553]
  5. Domain d1l8ie_: 1l8i E: [84554]
  6. Domain d1l8if_: 1l8i F: [84555]
  7. Domain d1l8ig_: 1l8i G: [84556]
  8. Domain d1l8ih_: 1l8i H: [84557]
  9. Domain d1l8ii_: 1l8i I: [84558]
  10. Domain d1l8ij_: 1l8i J: [84559]
  11. Domain d1l8ik_: 1l8i K: [84560]
  12. Domain d1l8il_: 1l8i L: [84561]
    complexed with k, trs; mutant
Helicobacter pylori, Nap [TaxId:210] [81743] (1 PDB entry)
- Domains for 1ji4:
  1. Domain d1ji4a_: 1ji4 A: [77117]
  2. Domain d1ji4b_: 1ji4 B: [77118]
  3. Domain d1ji4c_: 1ji4 C: [77119]
  4. Domain d1ji4d_: 1ji4 D: [77120]
  5. Domain d1ji4e_: 1ji4 E: [77121]
  6. Domain d1ji4f_: 1ji4 F: [77122]
  7. Domain d1ji4g_: 1ji4 G: [77123]
  8. Domain d1ji4h_: 1ji4 H: [77124]
  9. Domain d1ji4i_: 1ji4 I: [77125]
  10. Domain d1ji4j_: 1ji4 J: [77126]
  11. Domain d1ji4k_: 1ji4 K: [77127]
  12. Domain d1ji4l_: 1ji4 L: [77128]
    complexed with fe, mpd, unx
Listeria innocua [TaxId:1642] [47252] (1 PDB entry)
- Domains for 1qgh:
  1. Domain d1qgha_: 1qgh A: [16728]
  2. Domain d1qghb_: 1qgh B: [16729]
  3. Domain d1qghc_: 1qgh C: [16730]
  4. Domain d1qghd_: 1qgh D: [16731]
  5. Domain d1qghe_: 1qgh E: [16732]
  6. Domain d1qghf_: 1qgh F: [16733]
  7. Domain d1qghg_: 1qgh G: [16734]
  8. Domain d1qghh_: 1qgh H: [16735]
  9. Domain d1qghi_: 1qgh I: [16736]
  10. Domain d1qghj_: 1qgh J: [16737]
  11. Domain d1qghk_: 1qgh K: [16738]
  12. Domain d1qghl_: 1qgh L: [16739]
Mycobacterium smegmatis [TaxId:1772] [109784] (3 PDB entries)
1. Domain for 1vei:
  - Domain d1veia_: 1vei A: [108531]
    complexed with fe, so4
2. Domains for 1vel:
  1. Domain d1vela_: 1vel A: [108532]
  2. Domain d1velb_: 1vel B: [108533]
  3. Domain d1velc_: 1vel C: [108534]
  4. Domain d1veld_: 1vel D: [108535]
  5. Domain d1vele_: 1vel E: [108536]
  6. Domain d1velf_: 1vel F: [108537]
    complexed with cd, na, so4
3. Domains for 1veq:
  1. Domain d1veqa_: 1veq A: [108538]
  2. Domain d1veqb_: 1veq B: [108539]
  3. Domain d1veqc_: 1veq C: [108540]
  4. Domain d1veqd_: 1veq D: [108541]
  5. Domain d1veqe_: 1veq E: [108542]
  6. Domain d1veqf_: 1veq F: [108543]
  7. Domain d1veqg_: 1veq G: [108544]
  8. Domain d1veqh_: 1veq H: [108545]
  9. Domain d1veqi_: 1veq I: [108546]
  10. Domain d1veqj_: 1veq J: [108547]
  11. Domain d1veqk_: 1veq K: [108548]
  12. Domain d1veql_: 1veq L: [108549]
    complexed with fe
Streptococcus suis [101134] (1 PDB entry)
- Domains for 1umn:
  1. Domain d1umna_: 1umn A: [99607]
  2. Domain d1umnb_: 1umn B: [99608]
  3. Domain d1umnc_: 1umn C: [99609]
  4. Domain d1umnd_: 1umn D: [99610]
  5. Domain d1umne_: 1umn E: [99611]
  6. Domain d1umnf_: 1umn F: [99612]
  7. Domain d1umng_: 1umn G: [99613]
  8. Domain d1umnh_: 1umn H: [99614]
  9. Domain d1umni_: 1umn I: [99615]
  10. Domain d1umnj_: 1umn J: [99616]
  11. Domain d1umnk_: 1umn K: [99617]
  12. Domain d1umnl_: 1umn L: [99618]
    complexed with ca, cl, epe

More info for Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin

Timeline for Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin:

Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin first appeared (with stable ids) in SCOP 1.55, called Protein Dodecameric ferritin homolog DPS from a.25.1.1: Ferritin
Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin appears in SCOP 1.69
Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin appears in SCOP 1.73
Protein Dodecameric ferritin homolog from a.25.1.1: Ferritin appears in the current release, SCOPe 2.08