• Browse
• Stats & History
• ASTRAL Subsets
• Downloads
• Related Resources
• References
• Help
• About

Lineage for Protein: (Apo)ferritin

1. Root: SCOP 1.75B

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies) core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families) contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.1: Ferritin [47241] (10 protein domains)

6. Protein (Apo)ferritin [47246] (8 species)

Species:

1. Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (7 PDB entries)

   1. Domain for 1bg7:

      • Domain d1bg7a_: 1bg7 A: [16686] complexed with ca

   2. Domains for 1mfr:

      1. Domain d1mfra_: 1mfr A: [16692] complexed with mg

      2. Domain d1mfrb_: 1mfr B: [16693] complexed with mg

      3. Domain d1mfrc_: 1mfr C: [16694] complexed with mg

      4. Domain d1mfrd_: 1mfr D: [16695] complexed with mg

      5. Domain d1mfre_: 1mfr E: [16696] complexed with mg

      6. Domain d1mfrf_: 1mfr F: [16697] complexed with mg

      7. Domain d1mfrg_: 1mfr G: [16698] complexed with mg

      8. Domain d1mfrh_: 1mfr H: [16699] complexed with mg

      9. Domain d1mfri_: 1mfr I: [16700] complexed with mg

      10. Domain d1mfrj_: 1mfr J: [16701] complexed with mg

      11. Domain d1mfrk_: 1mfr K: [16702] complexed with mg

      12. Domain d1mfrl_: 1mfr L: [16703] complexed with mg

      13. Domain d1mfrm_: 1mfr M: [16704] complexed with mg

      14. Domain d1mfrn_: 1mfr N: [16705] complexed with mg

      15. Domain d1mfro_: 1mfr O: [16706] complexed with mg

      16. Domain d1mfrp_: 1mfr P: [16707] complexed with mg

      17. Domain d1mfrq_: 1mfr Q: [16708] complexed with mg

      18. Domain d1mfrr_: 1mfr R: [16709] complexed with mg

      19. Domain d1mfrs_: 1mfr S: [16710] complexed with mg

      20. Domain d1mfrt_: 1mfr T: [16711] complexed with mg

      21. Domain d1mfru_: 1mfr U: [16712] complexed with mg

      22. Domain d1mfrv_: 1mfr V: [16713] complexed with mg

      23. Domain d1mfrw_: 1mfr W: [16714] complexed with mg

      24. Domain d1mfrx_: 1mfr X: [16715] complexed with mg

   3. Domain for 1rcc:

      • Domain d1rcca_: 1rcc A: [16690] complexed with bet

   4. Domain for 1rcd:

      • Domain d1rcda_: 1rcd A: [16687] complexed with bet

   5. Domain for 1rce:

      • Domain d1rcea_: 1rce A: [16691] complexed with bet

   6. Domain for 1rcg:

      • Domain d1rcga_: 1rcg A: [16689] complexed with bet

   7. Domain for 1rci:

      • Domain d1rcia_: 1rci A: [16688] complexed with bet

2. Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry) Uniprot Q8WQX3 21-211

   • Domain for 1z6o:

     • Domain d1z6om1: 1z6o M:1-191 [124543] Other proteins in same PDB: d1z6ob_, d1z6oc_, d1z6od_, d1z6oe_, d1z6of_, d1z6og_, d1z6oh_, d1z6oi_, d1z6oj_, d1z6ok_, d1z6ol_, d1z6on_, d1z6oo_, d1z6op_, d1z6oq_, d1z6or_, d1z6os_, d1z6ot_, d1z6ou_, d1z6ov_, d1z6ow_, d1z6ox_ complexed with ca, fe

3. Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry) Uniprot Q52SA8 1-200

   • Domain for 1z6o:

     • Domain d1z6oa1: 1z6o A:13-212 [124531] Other proteins in same PDB: d1z6ob_, d1z6oc_, d1z6od_, d1z6oe_, d1z6of_, d1z6og_, d1z6oh_, d1z6oi_, d1z6oj_, d1z6ok_, d1z6ol_, d1z6on_, d1z6oo_, d1z6op_, d1z6oq_, d1z6or_, d1z6os_, d1z6ot_, d1z6ou_, d1z6ov_, d1z6ow_, d1z6ox_ complexed with ca, fe

4. Horse (Equus caballus), L chain [TaxId:9796] [47248] (44 PDB entries)

   1. Domain for 1aew:

      • Domain d1aewa_: 1aew A: [16676] complexed with cd

   2. Domain for 1dat:

      • Domain d1data_: 1dat A: [16677] complexed with cd

   3. Domain for 1gwg:

      • Domain d1gwga_: 1gwg A: [70669] complexed with cd, iod

   4. Domain for 1hrs:

      • Domain d1hrsa_: 1hrs A: [16685] complexed with cd, pp9

   5. Domain for 1ier:

      • Domain d1iera_: 1ier A: [16678] complexed with cd

   6. Domains for 1ies:

      1. Domain d1iesa_: 1ies A: [16679] complexed with cd

      2. Domain d1iesb_: 1ies B: [16680] complexed with cd

      3. Domain d1iesc_: 1ies C: [16681] complexed with cd

      4. Domain d1iesd_: 1ies D: [16682] complexed with cd

      5. Domain d1iese_: 1ies E: [16683] complexed with cd

      6. Domain d1iesf_: 1ies F: [16684] complexed with cd

   7. Domain for 1xz1:

      • Domain d1xz1a_: 1xz1 A: [122467] automated match to d1hrs__ complexed with cd, hlt

   8. Domain for 1xz3:

      • Domain d1xz3a_: 1xz3 A: [122468] automated match to d1hrs__ complexed with cd, icf

   9. Domain for 2g4h:

      • Domain d2g4ha_: 2g4h A: [134594] automated match to d1dat__ complexed with cd, cl

   10. Domain for 2gyd:

       • Domain d2gyda_: 2gyd A: [135856] automated match to d1gwga_ complexed with cd, dfe

   11. Domain for 2v2i:

       • Domain d2v2ia_: 2v2i A: [152423] automated match to d1data_ complexed with cd, gol, so4

   12. Domain for 2v2j:

       • Domain d2v2ja_: 2v2j A: [152424] automated match to d1data_ complexed with cd, gol, so4

   13. Domain for 2v2n:

       • Domain d2v2na_: 2v2n A: [168314] automated match to d1data_ complexed with cd, gol, so4; mutant

   14. Domain for 2v2o:

       • Domain d2v2oa_: 2v2o A: [168315] automated match to d1data_ complexed with cd, gol, so4; mutant

   15. Domain for 2v2s:

       • Domain d2v2sa_: 2v2s A: [168318] automated match to d1data_ complexed with cd, gol, so4; mutant

   16. Domain for 2w0o:

       • Domain d2w0oa_: 2w0o A: [153737] automated match to d1hrsa_ complexed with cd, so4

   17. Domain for 2z5p:

       • Domain d2z5pa_: 2z5p A: [154164] automated match to d1data_ complexed with cd, gol, pd, so4

   18. Domain for 2z5q:

       • Domain d2z5qa_: 2z5q A: [154165] automated match to d1hrsa_ complexed with cd, gol, pd

   19. Domain for 2z5r:

       • Domain d2z5ra_: 2z5r A: [154166] automated match to d1hrsa_ complexed with cd, pd

   20. Domain for 2za6:

       • Domain d2za6a_: 2za6 A: [154274] automated match to d1data_ complexed with cd

   21. Domain for 2za7:

       • Domain d2za7a_: 2za7 A: [154275] automated match to d1data_ mutant

   22. Domain for 2zg7:

       • Domain d2zg7x_: 2zg7 X: [154419] automated match to d1hrsa_ complexed with cd, edo, pll, so4

   23. Domain for 2zg8:

       • Domain d2zg8x_: 2zg8 X: [171202] automated match to d1data_ complexed with cd, edo, pd, pll, so4

   24. Domain for 2zg9:

       • Domain d2zg9x_: 2zg9 X: [171203] automated match to d1data_ complexed with cd, edo, pll, so4

   25. Domain for 2zur:

       • Domain d2zurx_: 2zur X: [171533] automated match to d1hrsa_ complexed with cd, edo, rh, so4

   26. Domain for 3af7:

       • Domain d3af7x_: 3af7 X: [172031] automated match to d1hrsa_ complexed with cd, edo, pd, pll, so4

   27. Domain for 3af8:

       • Domain d3af8x_: 3af8 X: [172032] automated match to d1hrsa_ complexed with cd, edo, pll, so4

   28. Domain for 3af9:

       • Domain d3af9x_: 3af9 X: [172033] automated match to d1hrsa_ complexed with cd, edo, pd, pll, so4

   29. Domain for 3f32:

       • Domain d3f32a_: 3f32 A: [175430] automated match to d1hrsa_ complexed with cd, so4

   30. Domain for 3f33:

       • Domain d3f33a_: 3f33 A: [175431] automated match to d1hrsa_ complexed with cd, pfl, so4

   31. Domain for 3f34:

       • Domain d3f34a_: 3f34 A: [175432] automated match to d1hrsa_ complexed with act, cd, die, so4

   32. Domain for 3f35:

       • Domain d3f35a_: 3f35 A: [175433] automated match to d1hrsa_ complexed with cd, die, so4

   33. Domain for 3f36:

       • Domain d3f36a_: 3f36 A: [175434] automated match to d1hrsa_ complexed with cd, ip0, so4

   34. Domain for 3f37:

       • Domain d3f37a_: 3f37 A: [175435] automated match to d1hrsa_ complexed with 2my, act, cd, so4

   35. Domain for 3f38:

       • Domain d3f38a_: 3f38 A: [175436] automated match to d1hrsa_ complexed with 2my, cd, so4

   36. Domain for 3f39:

       • Domain d3f39a_: 3f39 A: [175437] automated match to d1hrsa_ complexed with cd, iph, so4

   37. Domain for 3fi6:

       • Domain d3fi6a_: 3fi6 A: [175820] automated match to d1data_ complexed with cd, pd, so4

   38. Domain for 3h7g:

       • Domain d3h7ga_: 3h7g A: [177305] automated match to d1data_ complexed with au3, cd, gol, so4

   39. Domain for 3noz:

       • Domain d3nozx_: 3noz X: [182452] automated match to d1hrsa_ complexed with cd, edo, pll, so4

   40. Domain for 3np0:

       • Domain d3np0x_: 3np0 X: [182453] automated match to d1hrsa_ complexed with cd, edo, pll, so4

   41. Domain for 3o7r:

       • Domain d3o7ra_: 3o7r A: [182861] automated match to d1data_ complexed with cd, edo, ru, so4

   42. Domain for 3o7s:

       • Domain d3o7sa_: 3o7s A: [182862] automated match to d1hrsa_ complexed with cd, edo, mml, ru, so4

   43. Domain for 3rav:

       • Domain d3rava_: 3rav A: [184874] automated match to d1hrsa_ complexed with cd, rav, so4

   44. Domain for 3rd0:

       • Domain d3rd0a_: 3rd0 A: [184884] automated match to d1hrsa_ complexed with cd, edp, so4

5. Human (Homo sapiens) [TaxId:9606] [187702] (3 PDB entries)

   1. Domain for 2ffx:

      • Domain d2ffxj_: 2ffx J: [164342] automated match to d1data_ complexed with cd, so4

   2. Domain for 2fg4:

      • Domain d2fg4a_: 2fg4 A: [164344] automated match to d1data_ complexed with cd

   3. Domains for 2fg8:

      1. Domain d2fg8a_: 2fg8 A: [164345] automated match to d1data_ complexed with cs

      2. Domain d2fg8b_: 2fg8 B: [164346] automated match to d1data_ complexed with cs

      3. Domain d2fg8c_: 2fg8 C: [164347] automated match to d1data_ complexed with cs

      4. Domain d2fg8d_: 2fg8 D: [164348] automated match to d1data_ complexed with cs

      5. Domain d2fg8e_: 2fg8 E: [164349] automated match to d1data_ complexed with cs

      6. Domain d2fg8f_: 2fg8 F: [164350] automated match to d1data_ complexed with cs

      7. Domain d2fg8g_: 2fg8 G: [164351] automated match to d1data_ complexed with cs

      8. Domain d2fg8h_: 2fg8 H: [164352] automated match to d1data_ complexed with cs

6. Human (Homo sapiens), H chain [TaxId:9606] [47247] (2 PDB entries)

   1. Domain for 1fha:

      • Domain d1fhaa_: 1fha A: [16675] complexed with ca, fe

   2. Domain for 2fha:

      • Domain d2fhaa_: 2fha A: [16674] complexed with ca

7. Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry) Uniprot Q8N4E7

   • Domain for 1r03:

     • Domain d1r03a_: 1r03 A: [104675] complexed with mg

8. Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)

   1. Domain for 1h96:

      • Domain d1h96a_: 1h96 A: [60811] complexed with cd, so4

   2. Domain for 1lb3:

      • Domain d1lb3a_: 1lb3 A: [77873] complexed with cd, gol, so4

More info for Protein (Apo)ferritin from a.25.1.1: Ferritin

Timeline for Protein (Apo)ferritin from a.25.1.1: Ferritin :

Protein (Apo)ferritin from a.25.1.1: Ferritin appears in SCOP 1.75A

Copyright © 1994-2013 The SCOP and Astral authors scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu