Lineage for Family a.25.1.1: Ferritin

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1264121Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 1264122Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 1264123Family a.25.1.1: Ferritin [47241] (10 proteins)

Proteins:

  1. 1264124(Apo)ferritin [47246] (8 species)
    1. 1264125Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (8 PDB entries)
    2. 1264165Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211
    3. 1264167Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200
    4. 1264169Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (46 PDB entries)
    5. 1264221Species Human (Homo sapiens) [TaxId:9606] [187702] (7 PDB entries)
    6. 1264305Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (2 PDB entries)
    7. 1264308Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7
    8. 1264310Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)
  2. 1264313Bacterioferritin (cytochrome b1) [47244] (5 species)
    binds heme between two subunits; 24-mer
    1. 1264314Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155
    2. 1264316Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)
    3. 1264365Species Escherichia coli K-12 [TaxId:83333] [188868] (3 PDB entries)
    4. 1264392Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)
    5. 1264533Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)
  3. 1264537Dodecameric ferritin homolog [47250] (14 species)
    1. 1264538Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
    2. 1264545Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
    3. 1264550Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
    4. 1264555Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
    5. 1264560Species Escherichia coli, Dps [TaxId:562] [47251] (7 PDB entries)
      ferritin homolog that binds to and protects DNA
    6. 1264657Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7
    7. 1264678Species Helicobacter pylori, Nap [TaxId:210] [81743] (7 PDB entries)
    8. 1264697Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173
    9. 1264702Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
      Uniprot A2RJ45 3-173
    10. 1264715Species Listeria innocua [TaxId:1642] [47252] (4 PDB entries)
    11. 1264731Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)
    12. 1264736Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
      Uniprot Q8VP75
    13. 1264769Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)
    14. 1264866Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
      Uniprot P16665 26-176
  4. 1264868Hypothetical protein PF1190 [140438] (1 species)
    significant sequence similarity to the half-ferritin family
  5. 1264872Hypothetical protein TM1526 [101132] (1 species)
  6. 1264875Hypothetical rubrerythrin [101130] (1 species)
  7. 1264879Nigerythrin, N-terminal domain [140440] (1 species)
  8. 1264887Non-hem ferritin [63524] (5 species)
    1. 1264888Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164
    2. 1264890Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)
    3. 1264892Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)
    4. 1264899Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (9 PDB entries)
    5. 1264966Species Thermotoga maritima [TaxId:2336] [109783] (1 PDB entry)
      Uniprot Q9X0L2
  9. 1264975Rubrerythrin, N-terminal domain [47242] (2 species)
    1. 1264976Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931
    2. 1264987Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)
  10. 1264992automated matches [190041] (22 species)
    not a true protein
    1. 1264993Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)
    2. 1265018Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)
    3. 1265042Species Blastochloris viridis [TaxId:1079] [193423] (3 PDB entries)
    4. 1265049Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)
    5. 1265062Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (12 PDB entries)
    6. 1265158Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)
    7. 1265161Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)
    8. 1265192Species Helicobacter pylori [TaxId:85963] [188967] (1 PDB entry)
    9. 1265199Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)
    10. 1265206Species Human (Homo sapiens) [TaxId:9606] [187027] (15 PDB entries)
    11. 1265233Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)
    12. 1265273Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)
    13. 1265298Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)
    14. 1265303Species Pseudomonas aeruginosa [TaxId:287] [189215] (5 PDB entries)
    15. 1265388Species Pyrococcus furiosus [TaxId:2261] [232940] (1 PDB entry)
    16. 1265391Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)
    17. 1265395Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)
    18. 1265420Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)
    19. 1265433Species Thermotoga maritima [TaxId:243274] [188168] (1 PDB entry)
    20. 1265442Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)
    21. 1265454Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)
    22. 1265458Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin: