Lineage for Family a.25.1.1: Ferritin

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2312408Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. 2312409Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. 2312410Family a.25.1.1: Ferritin [47241] (10 protein domains)

Protein Domains:

  1. 2312411(Apo)ferritin [47246] (8 species)
    1. 2312412Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (21 PDB entries)
    2. 2312465Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211
    3. 2312467Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200
    4. 2312469Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (69 PDB entries)
    5. 2312542Species Human (Homo sapiens) [TaxId:9606] [187702] (8 PDB entries)
    6. 2312627Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (2 PDB entries)
    7. 2312630Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7
    8. 2312632Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)
  2. 2312635Bacterioferritin (cytochrome b1) [47244] (6 species)
    binds heme between two subunits; 24-mer
    1. 2312636Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155
    2. 2312638Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)
    3. 2312687Species Escherichia coli K-12 [TaxId:83333] [188868] (6 PDB entries)
    4. 2312750Species Escherichia coli [TaxId:199310] [268908] (1 PDB entry)
    5. 2312763Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)
    6. 2312904Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)
  3. 2312908Dodecameric ferritin homolog [47250] (14 species)
    1. 2312909Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
    2. 2312916Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
    3. 2312921Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
    4. 2312926Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
    5. 2312931Species Escherichia coli, Dps [TaxId:562] [47251] (7 PDB entries)
      ferritin homolog that binds to and protects DNA
    6. 2313028Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7
    7. 2313049Species Helicobacter pylori, Nap [TaxId:210] [81743] (7 PDB entries)
    8. 2313068Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173
    9. 2313073Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
      Uniprot A2RJ45 3-173
    10. 2313086Species Listeria innocua [TaxId:1642] [47252] (4 PDB entries)
    11. 2313102Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)
    12. 2313107Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
      Uniprot Q8VP75
    13. 2313140Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)
    14. 2313237Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
      Uniprot P16665 26-176
  4. 2313239Hypothetical protein PF1190 [140438] (1 species)
    significant sequence similarity to the half-ferritin family
  5. 2313243Hypothetical protein TM1526 [101132] (1 species)
  6. 2313246Hypothetical rubrerythrin [101130] (1 species)
  7. 2313250Nigerythrin, N-terminal domain [140440] (1 species)
  8. 2313258Non-hem ferritin [63524] (7 species)
    1. 2313259Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164
    2. 2313261Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)
    3. 2313263Species Escherichia coli [TaxId:1110693] [260578] (1 PDB entry)
    4. 2313270Species Escherichia coli [TaxId:83333] [319417] (1 PDB entry)
    5. 2313277Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)
    6. 2313284Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (9 PDB entries)
    7. 2313351Species Thermotoga maritima [TaxId:2336] [109783] (1 PDB entry)
      Uniprot Q9X0L2
  9. 2313360Rubrerythrin, N-terminal domain [47242] (2 species)
    1. 2313361Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931
    2. 2313372Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)
  10. 2313377automated matches [190041] (29 species)
    not a true protein
    1. 2313378Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)
    2. 2313403Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)
    3. 2313427Species Blastochloris viridis [TaxId:1079] [193423] (3 PDB entries)
    4. 2313434Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)
    5. 2313447Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (19 PDB entries)
    6. 2313573Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)
    7. 2313576Species Escherichia coli [TaxId:536056] [318611] (1 PDB entry)
    8. 2313583Species Escherichia coli [TaxId:562] [259060] (4 PDB entries)
    9. 2313588Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)
    10. 2313619Species Helicobacter pylori [TaxId:85963] [188967] (2 PDB entries)
    11. 2313638Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)
    12. 2313645Species Human (Homo sapiens) [TaxId:9606] [187027] (28 PDB entries)
    13. 2313702Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)
    14. 2313742Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)
    15. 2313767Species Lithobates catesbeiana [TaxId:8400] [323613] (5 PDB entries)
    16. 2313773Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)
    17. 2313778Species Mycobacterium smegmatis [TaxId:246196] [338474] (1 PDB entry)
    18. 2313780Species Pseudomonas aeruginosa [TaxId:287] [189215] (12 PDB entries)
    19. 2313997Species Pyrococcus furiosus [TaxId:2261] [232940] (4 PDB entries)
    20. 2314018Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)
    21. 2314022Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)
    22. 2314047Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)
    23. 2314060Species Streptomyces coelicolor [TaxId:1902] [256737] (1 PDB entry)
    24. 2314062Species Thermotoga maritima [TaxId:243274] [188168] (1 PDB entry)
    25. 2314071Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)
    26. 2314083Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)
    27. 2314087Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)
    28. 3048406Species Escherichia coli [TaxId:83333] [348468] (1 PDB entry)
    29. 3055125Species Mus musculus [TaxId:10090] [355187] (2 PDB entries)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin: