Lineage for Family a.25.1.1: Ferritin

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
    core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection
  4. Superfamily a.25.1: Ferritin-like [47240] (10 families) (S)
    contains bimetal-ion centre in the middle of the bundle
  5. Family a.25.1.1: Ferritin [47241] (10 proteins)

Proteins:

  1. (Apo)ferritin [47246] (8 species)
    1. Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (21 PDB entries)
    2. Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211
    3. Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200
    4. Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (81 PDB entries)
    5. Species Human (Homo sapiens) [TaxId:9606] [187702] (9 PDB entries)
    6. Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (45 PDB entries)
    7. Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7
    8. Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)
  2. Bacterioferritin (cytochrome b1) [47244] (6 species)
    binds heme between two subunits; 24-mer
    1. Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155
    2. Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)
    3. Species Escherichia coli K-12 [TaxId:83333] [188868] (9 PDB entries)
    4. Species Escherichia coli [TaxId:199310] [268908] (1 PDB entry)
    5. Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)
    6. Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)
  3. Dodecameric ferritin homolog [47250] (16 species)
    1. Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)
    2. Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)
    3. Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)
    4. Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)
    5. Species Escherichia coli [TaxId:83333] [368371] (2 PDB entries)
    6. Species Escherichia coli, Dps [TaxId:562] [47251] (8 PDB entries)
      ferritin homolog that binds to and protects DNA
    7. Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7
    8. Species Helicobacter pylori, Nap [TaxId:210] [81743] (7 PDB entries)
    9. Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173
    10. Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
      Uniprot A2RJ45 3-173
    11. Species Listeria innocua [TaxId:1642] [47252] (7 PDB entries)
    12. Species Listeria innocua [TaxId:272626] [373578] (2 PDB entries)
    13. Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)
    14. Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
      Uniprot Q8VP75
    15. Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)
    16. Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
      Uniprot P16665 26-176
  4. Hypothetical protein PF1190 [140438] (1 species)
    significant sequence similarity to the half-ferritin family
  5. Hypothetical protein TM1526 [101132] (1 species)
  6. Hypothetical rubrerythrin [101130] (1 species)
  7. Nigerythrin, N-terminal domain [140440] (1 species)
  8. Non-hem ferritin [63524] (7 species)
    1. Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164
    2. Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)
    3. Species Escherichia coli [TaxId:1110693] [260578] (1 PDB entry)
    4. Species Escherichia coli [TaxId:83333] [319417] (1 PDB entry)
    5. Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)
    6. Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (9 PDB entries)
    7. Species Thermotoga maritima [TaxId:2336] [109783] (1 PDB entry)
      Uniprot Q9X0L2
  9. Rubrerythrin, N-terminal domain [47242] (2 species)
    1. Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931
    2. Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)
  10. automated matches [190041] (33 species)
    not a true protein
    1. Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)
    2. Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)
    3. Species Blastochloris viridis [TaxId:1079] [193423] (3 PDB entries)
    4. Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)
    5. Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (19 PDB entries)
    6. Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)
    7. Species Crassostrea gigas [TaxId:29159] [397195] (1 PDB entry)
    8. Species Escherichia coli [TaxId:536056] [318611] (1 PDB entry)
    9. Species Escherichia coli [TaxId:562] [259060] (4 PDB entries)
    10. Species Escherichia coli [TaxId:83333] [348468] (1 PDB entry)
    11. Species Escherichia coli [TaxId:83334] [357648] (1 PDB entry)
    12. Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)
    13. Species Helicobacter pylori [TaxId:85963] [188967] (2 PDB entries)
    14. Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)
    15. Species Human (Homo sapiens) [TaxId:9606] [187027] (12 PDB entries)
    16. Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)
    17. Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)
    18. Species Lithobates catesbeiana [TaxId:8400] [323613] (9 PDB entries)
    19. Species Mouse (Mus musculus) [TaxId:10090] [355187] (7 PDB entries)
    20. Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)
    21. Species Mycobacterium smegmatis [TaxId:246196] [338474] (1 PDB entry)
    22. Species Phascolosoma esculenta [TaxId:419950] [399640] (2 PDB entries)
    23. Species Pseudomonas aeruginosa [TaxId:287] [189215] (23 PDB entries)
    24. Species Pyrococcus furiosus [TaxId:2261] [232940] (4 PDB entries)
    25. Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)
    26. Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)
    27. Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)
    28. Species Streptomyces coelicolor [TaxId:1902] [256737] (1 PDB entry)
    29. Species Thermotoga maritima [TaxId:2336] [399745] (2 PDB entries)
    30. Species Thermotoga maritima [TaxId:243274] [188168] (8 PDB entries)
    31. Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)
    32. Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)
    33. Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin: