SCOPe 2.08: Family a.25.1.1: Ferritin

Lineage for Family a.25.1.1: Ferritin

1. Root: SCOPe 2.08

2. Class a: All alpha proteins [46456] (290 folds)

3. Fold a.25: Ferritin-like [47239] (6 superfamilies)
   core: 4 helices; bundle, closed, left-handed twist; 1 crossover connection

4. Superfamily a.25.1: Ferritin-like [47240] (10 families)
   contains bimetal-ion centre in the middle of the bundle

5. Family a.25.1.1: Ferritin [47241] (10 proteins)

Proteins:

1. (Apo)ferritin [47246] (8 species)

   1. Species Bullfrog (Rana catesbeiana) [TaxId:8400] [47249] (21 PDB entries)

   2. Species Cabbage looper (Trichoplusia ni), H chain [TaxId:7111] [140437] (1 PDB entry)
      Uniprot Q8WQX3 21-211

   3. Species Cabbage looper (Trichoplusia ni), L chain [TaxId:7111] [140436] (1 PDB entry)
      Uniprot Q52SA8 1-200

   4. Species Horse (Equus caballus), L chain [TaxId:9796] [47248] (83 PDB entries)

   5. Species Human (Homo sapiens) [TaxId:9606] [187702] (9 PDB entries)

   6. Species Human (Homo sapiens), H chain [TaxId:9606] [47247] (46 PDB entries)

   7. Species Human (Homo sapiens), mitocondial isoform [TaxId:9606] [109785] (1 PDB entry)
      Uniprot Q8N4E7

   8. Species Mouse (Mus musculus) [TaxId:10090] [63526] (2 PDB entries)

2. Bacterioferritin (cytochrome b1) [47244] (6 species)
   binds heme between two subunits; 24-mer

   1. Species Azotobacter vinelandii [TaxId:354] [140431] (1 PDB entry)
      Uniprot P22759 1-155

   2. Species Desulfovibrio desulfuricans [TaxId:876] [89025] (3 PDB entries)

   3. Species Escherichia coli K-12 [TaxId:83333] [188868] (9 PDB entries)

   4. Species Escherichia coli [TaxId:199310] [268908] (1 PDB entry)

   5. Species Escherichia coli [TaxId:562] [47245] (11 PDB entries)

   6. Species Rhodobacter capsulatus [TaxId:1061] [69004] (1 PDB entry)

3. Dodecameric ferritin homolog [47250] (16 species)

   1. Species Agrobacterium tumefaciens, Dps [TaxId:358] [89027] (1 PDB entry)

   2. Species Bacillus anthracis, Dlp-1 [TaxId:1392] [74705] (1 PDB entry)

   3. Species Bacillus anthracis, Dlp-2 [TaxId:1392] [74706] (1 PDB entry)

   4. Species Bacillus brevis, Dps [TaxId:1393] [89026] (1 PDB entry)

   5. Species Escherichia coli [TaxId:83333] [368371] (2 PDB entries)

   6. Species Escherichia coli, Dps [TaxId:562] [47251] (8 PDB entries)
      ferritin homolog that binds to and protects DNA

   7. Species Halobacterium salinarum [TaxId:2242] [101135] (5 PDB entries)
      Uniprot Q9HMP7

   8. Species Helicobacter pylori, Nap [TaxId:210] [81743] (7 PDB entries)

   9. Species Lactococcus lactis, DpsA [TaxId:1358] [140434] (1 PDB entry)
      Uniprot A2RLG8 6-173

   10. Species Lactococcus lactis, DpsB [TaxId:1358] [140433] (1 PDB entry)
       Uniprot A2RJ45 3-173

   11. Species Listeria innocua [TaxId:1642] [47252] (7 PDB entries)

   12. Species Listeria innocua [TaxId:272626] [373578] (2 PDB entries)

   13. Species Lyme disease spirochete (Borrelia burgdorferi) [TaxId:139] [188558] (1 PDB entry)

   14. Species Mycobacterium smegmatis [TaxId:1772] [109784] (5 PDB entries)
       Uniprot Q8VP75

   15. Species Streptococcus suis [TaxId:1307] [101134] (8 PDB entries)

   16. Species Treponema pallidum, TpF1 [TaxId:160] [140435] (1 PDB entry)
       Uniprot P16665 26-176

4. Hypothetical protein PF1190 [140438] (1 species)
   significant sequence similarity to the half-ferritin family

   • Species Pyrococcus furiosus [TaxId:2261] [140439] (1 PDB entry)
     Uniprot Q8U1L6 9-166

5. Hypothetical protein TM1526 [101132] (1 species)

   • Species Thermotoga maritima [TaxId:2336] [101133] (1 PDB entry)

6. Hypothetical rubrerythrin [101130] (1 species)

   • Species Sulfolobus tokodaii [TaxId:111955] [101131] (1 PDB entry)

7. Nigerythrin, N-terminal domain [140440] (1 species)

   • Species Desulfovibrio vulgaris [TaxId:881] [140441] (3 PDB entries)
     Uniprot P30820 1-166

8. Non-hem ferritin [63524] (7 species)

   1. Species Archaeoglobus fulgidus [TaxId:2234] [140432] (1 PDB entry)
      Uniprot O29424 3-164

   2. Species Campylobacter jejuni [TaxId:197] [69005] (1 PDB entry)

   3. Species Escherichia coli [TaxId:1110693] [260578] (1 PDB entry)

   4. Species Escherichia coli [TaxId:83333] [319417] (1 PDB entry)

   5. Species Escherichia coli, FtnA [TaxId:562] [63525] (1 PDB entry)

   6. Species Pseudo-nitzschia multiseries [TaxId:37319] [188675] (9 PDB entries)

   7. Species Thermotoga maritima [TaxId:2336] [109783] (5 PDB entries)
      Uniprot Q9X0L2

9. Rubrerythrin, N-terminal domain [47242] (2 species)

   1. Species Desulfovibrio vulgaris [TaxId:881] [47243] (10 PDB entries)
      Uniprot P24931

   2. Species Pyrococcus furiosus [TaxId:2261] [101129] (2 PDB entries)

10. automated matches [190041] (34 species)
    not a true protein

    1. Species Archaeoglobus fulgidus [TaxId:2234] [189565] (1 PDB entry)

    2. Species Azotobacter vinelandii [TaxId:354] [186762] (3 PDB entries)

    3. Species Blastochloris viridis [TaxId:1079] [193423] (3 PDB entries)

    4. Species Brucella melitensis [TaxId:29459] [188807] (1 PDB entry)

    5. Species Bullfrog (Rana catesbeiana) [TaxId:8400] [189485] (19 PDB entries)

    6. Species Burkholderia pseudomallei [TaxId:320372] [196065] (1 PDB entry)

    7. Species Crassostrea gigas [TaxId:29159] [397195] (2 PDB entries)

    8. Species Escherichia coli [TaxId:536056] [318611] (1 PDB entry)

    9. Species Escherichia coli [TaxId:562] [259060] (4 PDB entries)

    10. Species Escherichia coli [TaxId:83333] [348468] (2 PDB entries)

    11. Species Escherichia coli [TaxId:83334] [357648] (1 PDB entry)

    12. Species Helicobacter pylori [TaxId:210] [188725] (5 PDB entries)

    13. Species Helicobacter pylori [TaxId:85963] [188967] (2 PDB entries)

    14. Species Horse (Equus caballus) [TaxId:9796] [187199] (6 PDB entries)

    15. Species Human (Homo sapiens) [TaxId:9606] [187027] (13 PDB entries)

    16. Species Listeria innocua [TaxId:1642] [186977] (3 PDB entries)

    17. Species Listeria monocytogenes [TaxId:1639] [187885] (1 PDB entry)

    18. Species Lithobates catesbeiana [TaxId:8400] [323613] (9 PDB entries)

    19. Species Mouse (Mus musculus) [TaxId:10090] [355187] (7 PDB entries)

    20. Species Mycobacterium smegmatis [TaxId:1772] [186784] (1 PDB entry)

    21. Species Mycobacterium smegmatis [TaxId:246196] [338474] (1 PDB entry)

    22. Species Phascolosoma esculenta [TaxId:419950] [399640] (2 PDB entries)

    23. Species Pseudomonas aeruginosa [TaxId:287] [189215] (23 PDB entries)

    24. Species Pyrococcus furiosus [TaxId:2261] [232940] (4 PDB entries)

    25. Species Rhodobacter sphaeroides [TaxId:272943] [189145] (1 PDB entry)

    26. Species Salmonella enterica [TaxId:439842] [189595] (2 PDB entries)

    27. Species Streptococcus suis [TaxId:1307] [187539] (1 PDB entry)

    28. Species Streptomyces coelicolor [TaxId:1902] [256737] (1 PDB entry)

    29. Species Thermotoga maritima [TaxId:2336] [399745] (2 PDB entries)

    30. Species Thermotoga maritima [TaxId:243274] [188168] (10 PDB entries)

    31. Species Trichoplusia ni [TaxId:7111] [188170] (1 PDB entry)

    32. Species Vibrio cholerae [TaxId:243277] [189679] (1 PDB entry)

    33. Species Yersinia pestis [TaxId:187410] [195837] (1 PDB entry)

    34. Species Sulfurisphaera tokodaii [TaxId:273063] [422807] (1 PDB entry)

More info for Family a.25.1.1: Ferritin

Timeline for Family a.25.1.1: Ferritin:

• Family a.25.1.1: Ferritin first appeared (with stable ids) in SCOP 1.55
  
• Family a.25.1.1: Ferritin appears in SCOPe 2.07