SCOPe 2.01: Protein: Histone H4

Lineage for Protein: Histone H4

Root: SCOPe 2.01
Class a: All alpha proteins [46456] (284 folds)
Fold a.22: Histone-fold [47112] (1 superfamily)
core: 3 helices; long middle helix is flanked at each end with shorter ones
Superfamily a.22.1: Histone-fold [47113] (4 families)
Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
form octamers composed of two copies of each of the four histones
Protein Histone H4 [47125] (5 species)

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [47127] (33 PDB entries)
1. Domains for 1aoi:
  1. Domain d1aoib_: 1aoi B: [16470]
    Other proteins in same PDB: d1aoia_, d1aoic_, d1aoid_, d1aoie_, d1aoig_, d1aoih_
    protein/DNA complex; complexed with mn
  2. Domain d1aoif_: 1aoi F: [16471]
    Other proteins in same PDB: d1aoia_, d1aoic_, d1aoid_, d1aoie_, d1aoig_, d1aoih_
    protein/DNA complex; complexed with mn
2. Domains for 1kx3:
  1. Domain d1kx3b_: 1kx3 B: [77578]
    Other proteins in same PDB: d1kx3a_, d1kx3c_, d1kx3d_, d1kx3e_, d1kx3g_, d1kx3h_
    protein/DNA complex; complexed with mn
  2. Domain d1kx3f_: 1kx3 F: [77582]
    Other proteins in same PDB: d1kx3a_, d1kx3c_, d1kx3d_, d1kx3e_, d1kx3g_, d1kx3h_
    protein/DNA complex; complexed with mn
3. Domains for 1kx4:
  1. Domain d1kx4b_: 1kx4 B: [77586]
    Other proteins in same PDB: d1kx4a_, d1kx4c_, d1kx4d_, d1kx4e_, d1kx4g_, d1kx4h_
    protein/DNA complex; complexed with cl, mn
  2. Domain d1kx4f_: 1kx4 F: [77590]
    Other proteins in same PDB: d1kx4a_, d1kx4c_, d1kx4d_, d1kx4e_, d1kx4g_, d1kx4h_
    protein/DNA complex; complexed with cl, mn
4. Domains for 1kx5:
  1. Domain d1kx5b_: 1kx5 B: [77594]
    Other proteins in same PDB: d1kx5a_, d1kx5c_, d1kx5d_, d1kx5e_, d1kx5g_, d1kx5h_
    protein/DNA complex; complexed with cl, mn
  2. Domain d1kx5f_: 1kx5 F: [77598]
    Other proteins in same PDB: d1kx5a_, d1kx5c_, d1kx5d_, d1kx5e_, d1kx5g_, d1kx5h_
    protein/DNA complex; complexed with cl, mn
5. Domains for 1m18:
  1. Domain d1m18b_: 1m18 B: [78372]
    Other proteins in same PDB: d1m18a_, d1m18c_, d1m18d_, d1m18e_, d1m18g_, d1m18h_
    protein/DNA complex; complexed with abu, imt, mn
  2. Domain d1m18f_: 1m18 F: [78376]
    Other proteins in same PDB: d1m18a_, d1m18c_, d1m18d_, d1m18e_, d1m18g_, d1m18h_
    protein/DNA complex; complexed with abu, imt, mn
6. Domains for 1m19:
  1. Domain d1m19b_: 1m19 B: [78380]
    Other proteins in same PDB: d1m19a_, d1m19c_, d1m19d_, d1m19e_, d1m19g_, d1m19h_
    protein/DNA complex; complexed with imt, mn
  2. Domain d1m19f_: 1m19 F: [78384]
    Other proteins in same PDB: d1m19a_, d1m19c_, d1m19d_, d1m19e_, d1m19g_, d1m19h_
    protein/DNA complex; complexed with imt, mn
7. Domains for 1m1a:
  1. Domain d1m1ab_: 1m1a B: [78388]
    Other proteins in same PDB: d1m1aa_, d1m1ac_, d1m1ad_, d1m1ae_, d1m1ag_, d1m1ah_
    protein/DNA complex; complexed with imt, mn
  2. Domain d1m1af_: 1m1a F: [78392]
    Other proteins in same PDB: d1m1aa_, d1m1ac_, d1m1ad_, d1m1ae_, d1m1ag_, d1m1ah_
    protein/DNA complex; complexed with imt, mn
8. Domains for 1p34:
  1. Domain d1p34b_: 1p34 B: [93971]
    Other proteins in same PDB: d1p34a_, d1p34c_, d1p34d_, d1p34e_, d1p34g_, d1p34h_
    protein/DNA complex; mutant
  2. Domain d1p34f_: 1p34 F: [93975]
    Other proteins in same PDB: d1p34a_, d1p34c_, d1p34d_, d1p34e_, d1p34g_, d1p34h_
    protein/DNA complex; mutant
9. Domains for 1p3a:
  1. Domain d1p3ab_: 1p3a B: [93981]
    Other proteins in same PDB: d1p3aa_, d1p3ac_, d1p3ad_, d1p3ae_, d1p3ag_, d1p3ah_
    protein/DNA complex; mutant
  2. Domain d1p3af_: 1p3a F: [93985]
    Other proteins in same PDB: d1p3aa_, d1p3ac_, d1p3ad_, d1p3ae_, d1p3ag_, d1p3ah_
    protein/DNA complex; mutant
10. Domains for 1p3b:
  1. Domain d1p3bb_: 1p3b B: [93989]
    Other proteins in same PDB: d1p3ba_, d1p3bc_, d1p3bd_, d1p3be_, d1p3bg_, d1p3bh_
    protein/DNA complex; mutant
  2. Domain d1p3bf_: 1p3b F: [93993]
    Other proteins in same PDB: d1p3ba_, d1p3bc_, d1p3bd_, d1p3be_, d1p3bg_, d1p3bh_
    protein/DNA complex; mutant
11. Domains for 1p3f:
  1. Domain d1p3fb_: 1p3f B: [93999]
    Other proteins in same PDB: d1p3fa_, d1p3fc_, d1p3fd_, d1p3fe_, d1p3fg_, d1p3fh_
    protein/DNA complex; mutant
  2. Domain d1p3ff_: 1p3f F: [94003]
    Other proteins in same PDB: d1p3fa_, d1p3fc_, d1p3fd_, d1p3fe_, d1p3fg_, d1p3fh_
    protein/DNA complex; mutant
12. Domains for 1p3g:
  1. Domain d1p3gb_: 1p3g B: [94007]
    Other proteins in same PDB: d1p3ga_, d1p3gc_, d1p3gd_, d1p3ge_, d1p3gg_, d1p3gh_
    protein/DNA complex; mutant
  2. Domain d1p3gf_: 1p3g F: [94011]
    Other proteins in same PDB: d1p3ga_, d1p3gc_, d1p3gd_, d1p3ge_, d1p3gg_, d1p3gh_
    protein/DNA complex; mutant
13. Domains for 1p3i:
  1. Domain d1p3ib_: 1p3i B: [94015]
    Other proteins in same PDB: d1p3ia_, d1p3ic_, d1p3id_, d1p3ie_, d1p3ig_, d1p3ih_
    protein/DNA complex; mutant
  2. Domain d1p3if_: 1p3i F: [94019]
    Other proteins in same PDB: d1p3ia_, d1p3ic_, d1p3id_, d1p3ie_, d1p3ig_, d1p3ih_
    protein/DNA complex; mutant
14. Domains for 1p3k:
  1. Domain d1p3kb_: 1p3k B: [94025]
    Other proteins in same PDB: d1p3ka_, d1p3kc_, d1p3kd_, d1p3ke_, d1p3kg_, d1p3kh_
    protein/DNA complex; mutant
  2. Domain d1p3kf_: 1p3k F: [94029]
    Other proteins in same PDB: d1p3ka_, d1p3kc_, d1p3kd_, d1p3ke_, d1p3kg_, d1p3kh_
    protein/DNA complex; mutant
15. Domains for 1p3l:
  1. Domain d1p3lb_: 1p3l B: [94033]
    Other proteins in same PDB: d1p3la_, d1p3lc_, d1p3ld_, d1p3le_, d1p3lg_, d1p3lh_
    protein/DNA complex; mutant
  2. Domain d1p3lf_: 1p3l F: [94037]
    Other proteins in same PDB: d1p3la_, d1p3lc_, d1p3ld_, d1p3le_, d1p3lg_, d1p3lh_
    protein/DNA complex; mutant
16. Domains for 1p3m:
  1. Domain d1p3mb_: 1p3m B: [94041]
    Other proteins in same PDB: d1p3ma_, d1p3mc_, d1p3md_, d1p3me_, d1p3mg_, d1p3mh_
    protein/DNA complex; mutant
  2. Domain d1p3mf_: 1p3m F: [94045]
    Other proteins in same PDB: d1p3ma_, d1p3mc_, d1p3md_, d1p3me_, d1p3mg_, d1p3mh_
    protein/DNA complex; mutant
17. Domains for 1p3o:
  1. Domain d1p3ob_: 1p3o B: [94050]
    Other proteins in same PDB: d1p3oa_, d1p3oc_, d1p3od_, d1p3oe_, d1p3og_, d1p3oh_
    protein/DNA complex; mutant
  2. Domain d1p3of_: 1p3o F: [94054]
    Other proteins in same PDB: d1p3oa_, d1p3oc_, d1p3od_, d1p3oe_, d1p3og_, d1p3oh_
    protein/DNA complex; mutant
18. Domains for 1p3p:
  1. Domain d1p3pb_: 1p3p B: [94058]
    Other proteins in same PDB: d1p3pa_, d1p3pc_, d1p3pd_, d1p3pe_, d1p3pg_, d1p3ph_
    protein/DNA complex; mutant
  2. Domain d1p3pf_: 1p3p F: [94062]
    Other proteins in same PDB: d1p3pa_, d1p3pc_, d1p3pd_, d1p3pe_, d1p3pg_, d1p3ph_
    protein/DNA complex; mutant
19. Domains for 1s32:
  1. Domain d1s32b_: 1s32 B: [98413]
    Other proteins in same PDB: d1s32a_, d1s32c_, d1s32d_, d1s32e_, d1s32g_, d1s32h_
    protein/DNA complex; complexed with cl, imt, mn, ogg
  2. Domain d1s32f_: 1s32 F: [98417]
    Other proteins in same PDB: d1s32a_, d1s32c_, d1s32d_, d1s32e_, d1s32g_, d1s32h_
    protein/DNA complex; complexed with cl, imt, mn, ogg
20. Domains for 1u35:
  1. Domain d1u35b1: 1u35 B:24-102 [119494]
    Other proteins in same PDB: d1u35a1, d1u35c1, d1u35d1, d1u35e1, d1u35g1, d1u35h1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d1u35f1: 1u35 F:224-302 [119498]
    Other proteins in same PDB: d1u35a1, d1u35c1, d1u35d1, d1u35e1, d1u35g1, d1u35h1
    automatically matched to d1p3ob_
    protein/DNA complex
21. Domains for 1zbb:
  1. Domain d1zbbb1: 1zbb B:24-102 [145986]
    Other proteins in same PDB: d1zbba1, d1zbbd1, d1zbbe1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d1zbbf1: 1zbb F:24-102 [145989]
    Other proteins in same PDB: d1zbba1, d1zbbd1, d1zbbe1
    automatically matched to d1p3ob_
    protein/DNA complex
22. Domains for 1zla:
  1. Domain d1zlab1: 1zla B:24-102 [125241]
    Other proteins in same PDB: d1zlaa_, d1zlac1, d1zlad1, d1zlae_, d1zlag1, d1zlah1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d1zlaf1: 1zla F:224-302 [125245]
    Other proteins in same PDB: d1zlaa_, d1zlac1, d1zlad1, d1zlae_, d1zlag1, d1zlah1
    automatically matched to d1p3ob_
    protein/DNA complex
23. Domains for 2aro:
  1. Domain d2arod1: 2aro D:24-102 [127212]
    Other proteins in same PDB: d2aroa1, d2arob1, d2aroc_, d2aroe1, d2arof1, d2arog_
    automatically matched to d1p3ob_
    complexed with cl, po4
  2. Domain d2aroh1: 2aro H:24-102 [127216]
    Other proteins in same PDB: d2aroa1, d2arob1, d2aroc_, d2aroe1, d2arof1, d2arog_
    automatically matched to d1p3ob_
    complexed with cl, po4
24. Domains for 2cv5:
  1. Domain d2cv5b1: 2cv5 B:25-102 [130848]
    Other proteins in same PDB: d2cv5a_, d2cv5c1, d2cv5d1, d2cv5e_, d2cv5g1, d2cv5h1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with cl, mn
  2. Domain d2cv5f1: 2cv5 F:24-102 [130852]
    Other proteins in same PDB: d2cv5a_, d2cv5c1, d2cv5d1, d2cv5e_, d2cv5g1, d2cv5h1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with cl, mn
25. Domains for 2f8n:
  1. Domain d2f8nb1: 2f8n B:24-102 [133134]
    Other proteins in same PDB: d2f8na_, d2f8nd_, d2f8ne_, d2f8ng_, d2f8nh1, d2f8nk1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d2f8nf1: 2f8n F:224-302 [133137]
    Other proteins in same PDB: d2f8na_, d2f8nd_, d2f8ne_, d2f8ng_, d2f8nh1, d2f8nk1
    automatically matched to d1p3ob_
    protein/DNA complex
26. Domains for 2fj7:
  1. Domain d2fj7b1: 2fj7 B:24-102 [133549]
    Other proteins in same PDB: d2fj7a1, d2fj7d1, d2fj7e1, d2fj7h1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d2fj7f1: 2fj7 F:24-102 [133552]
    Other proteins in same PDB: d2fj7a1, d2fj7d1, d2fj7e1, d2fj7h1
    automatically matched to d1p3ob_
    protein/DNA complex
27. Domain for 2io5:
  - Domain d2io5c1: 2io5 C:24-100 [137542]
    Other proteins in same PDB: d2io5a1, d2io5b_
    automatically matched to d1p3ob_
28. Domains for 2nzd:
  1. Domain d2nzdb1: 2nzd B:24-102 [138849]
    Other proteins in same PDB: d2nzda_, d2nzdc_, d2nzde_, d2nzdg_
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
  2. Domain d2nzdf1: 2nzd F:24-102 [138852]
    Other proteins in same PDB: d2nzda_, d2nzdc_, d2nzde_, d2nzdg_
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
29. Domains for 3b6f:
  1. Domain d3b6fb1: 3b6f B:24-102 [154885]
    Other proteins in same PDB: d3b6fa1, d3b6fc1, d3b6fd1, d3b6fe1, d3b6fg1, d3b6fh1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
  2. Domain d3b6ff1: 3b6f F:24-102 [154889]
    Other proteins in same PDB: d3b6fa1, d3b6fc1, d3b6fd1, d3b6fe1, d3b6fg1, d3b6fh1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
30. Domains for 3b6g:
  1. Domain d3b6gb1: 3b6g B:24-102 [154893]
    Other proteins in same PDB: d3b6ga1, d3b6gc1, d3b6gd1, d3b6ge1, d3b6gg1, d3b6gh1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
  2. Domain d3b6gf1: 3b6g F:24-102 [154897]
    Other proteins in same PDB: d3b6ga1, d3b6gc1, d3b6gd1, d3b6ge1, d3b6gg1, d3b6gh1
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with mn
31. Domains for 3c1b:
  1. Domain d3c1bb_: 3c1b B: [155852]
    Other proteins in same PDB: d3c1ba_, d3c1bc1, d3c1bd1, d3c1be_, d3c1bg1, d3c1bh1
    automated match to d1eqzd_
    protein/DNA complex
  2. Domain d3c1bf_: 3c1b F: [155856]
    Other proteins in same PDB: d3c1ba_, d3c1bc1, d3c1bd1, d3c1be_, d3c1bg1, d3c1bh1
    automated match to d1eqzd_
    protein/DNA complex
32. Domains for 3c1c:
  1. Domain d3c1cb1: 3c1c B:25-102 [155859]
    Other proteins in same PDB: d3c1cc1, d3c1cd1, d3c1cg1, d3c1ch1
    automatically matched to d1p3ob_
    protein/DNA complex
  2. Domain d3c1cf1: 3c1c F:224-302 [155862]
    Other proteins in same PDB: d3c1cc1, d3c1cd1, d3c1cg1, d3c1ch1
    automatically matched to d1p3ob_
    protein/DNA complex
33. Domain for 3nqj:
  - Domain d3nqjb_: 3nqj B: [182485]
    automated match to d1aoib_
    complexed with po4
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [68987] (1 PDB entry)
- Domains for 1id3:
  1. Domain d1id3b_: 1id3 B: [66113]
    Other proteins in same PDB: d1id3a_, d1id3c_, d1id3d_, d1id3e_, d1id3g_, d1id3h_
    protein/DNA complex; complexed with mn
  2. Domain d1id3f_: 1id3 F: [66117]
    Other proteins in same PDB: d1id3a_, d1id3c_, d1id3d_, d1id3e_, d1id3g_, d1id3h_
    protein/DNA complex; complexed with mn
Chicken (Gallus gallus), erythrocytes [TaxId:9031] [47126] (5 PDB entries)
Uniprot P62801
1. Domains for 1eqz:
  1. Domain d1eqzd_: 1eqz D: [16466]
    Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzc_, d1eqze_, d1eqzf_, d1eqzg_
    protein/DNA complex; complexed with cac, cl, k, mn
  2. Domain d1eqzh_: 1eqz H: [16467]
    Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzc_, d1eqze_, d1eqzf_, d1eqzg_
    protein/DNA complex; complexed with cac, cl, k, mn
2. Domain for 1hio:
  - Domain d1hiod_: 1hio D: [16469]
    Other proteins in same PDB: d1hioa_, d1hiob_, d1hioc_
3. Domains for 1hq3:
  1. Domain d1hq3d_: 1hq3 D: [16464]
    Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3c_, d1hq3e_, d1hq3f_, d1hq3g_
    complexed with cl, po4
  2. Domain d1hq3h_: 1hq3 H: [16465]
    Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3c_, d1hq3e_, d1hq3f_, d1hq3g_
    complexed with cl, po4
4. Domains for 1tzy:
  1. Domain d1tzyd_: 1tzy D: [107533]
    Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyc_, d1tzye_, d1tzyf_, d1tzyg_
    complexed with cl, po4
  2. Domain d1tzyh_: 1tzy H: [107537]
    Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyc_, d1tzye_, d1tzyf_, d1tzyg_
    complexed with cl, po4
5. Domain for 2hio:
  - Domain d2hiod_: 2hio D: [16468]
    Other proteins in same PDB: d2hioa_, d2hiob_, d2hioc_
Fruit fly (Drosophila melanogaster) [TaxId:7227] [158387] (2 PDB entries)
1. Domains for 2nqb:
  1. Domain d2nqba_: 2nqb A: [148340]
    Other proteins in same PDB: d2nqbb1, d2nqbf1
    automated match to d1kx5a_
    protein/DNA complex
  2. Domain d2nqbe_: 2nqb E: [148342]
    Other proteins in same PDB: d2nqbb1, d2nqbf1
    automated match to d1kx5a_
    protein/DNA complex
2. Domains for 2pyo:
  1. Domain d2pyob1: 2pyo B:23-102 [149950]
    Other proteins in same PDB: d2pyoa_, d2pyoe_
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with cl, mn
  2. Domain d2pyof1: 2pyo F:22-102 [149952]
    Other proteins in same PDB: d2pyoa_, d2pyoe_
    automatically matched to d1p3ob_
    protein/DNA complex; complexed with cl, mn
Mouse (Mus musculus) [TaxId:10090] [47128] (1 PDB entry)
- Domains for 1f66:
  1. Domain d1f66b_: 1f66 B: [16472]
    Other proteins in same PDB: d1f66a_, d1f66c_, d1f66d_, d1f66e_, d1f66g_, d1f66h_
    protein/DNA complex; complexed with mn
  2. Domain d1f66f_: 1f66 F: [16473]
    Other proteins in same PDB: d1f66a_, d1f66c_, d1f66d_, d1f66e_, d1f66g_, d1f66h_
    protein/DNA complex; complexed with mn

More info for Protein Histone H4 from a.22.1.1: Nucleosome core histones

Timeline for Protein Histone H4 from a.22.1.1: Nucleosome core histones:

Protein Histone H4 from a.22.1.1: Nucleosome core histones first appeared (with stable ids) in SCOP 1.55
Protein Histone H4 from a.22.1.1: Nucleosome core histones appears in SCOP 1.75
Protein Histone H4 from a.22.1.1: Nucleosome core histones appears in SCOPe 2.02
Protein Histone H4 from a.22.1.1: Nucleosome core histones appears in the current release, SCOPe 2.08