SCOPe 2.07: Species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Lineage for Species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Root: SCOPe 2.07
Class a: All alpha proteins [46456] (289 folds)
Fold a.22: Histone-fold [47112] (1 superfamily)
core: 3 helices; long middle helix is flanked at each end with shorter ones
Superfamily a.22.1: Histone-fold [47113] (5 families)
Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
form octamers composed of two copies of each of the four histones
Protein Histone H2B [47119] (6 species)
Species African clawed frog (Xenopus laevis) [TaxId:8355] [47121] (42 PDB entries)

PDB entries in Species: African clawed frog (Xenopus laevis) [TaxId: 8355]:

Domain(s) for 1aoi:
1. Domain d1aoid_: 1aoi D: [16452]
  Other proteins in same PDB: d1aoia_, d1aoib_, d1aoic_, d1aoie_, d1aoif_, d1aoig_
  protein/DNA complex; complexed with mn
2. Domain d1aoih_: 1aoi H: [16453]
  Other proteins in same PDB: d1aoia_, d1aoib_, d1aoic_, d1aoie_, d1aoif_, d1aoig_
  protein/DNA complex; complexed with mn
Domain(s) for 1f66:
1. Domain d1f66d_: 1f66 D: [16450]
  Other proteins in same PDB: d1f66a_, d1f66b_, d1f66c_, d1f66e_, d1f66f_, d1f66g_
  protein/DNA complex; complexed with mn
2. Domain d1f66h_: 1f66 H: [16451]
  Other proteins in same PDB: d1f66a_, d1f66b_, d1f66c_, d1f66e_, d1f66f_, d1f66g_
  protein/DNA complex; complexed with mn
Domain(s) for 1kx3:
1. Domain d1kx3d_: 1kx3 D: [77580]
  Other proteins in same PDB: d1kx3a_, d1kx3b_, d1kx3c_, d1kx3e_, d1kx3f_, d1kx3g_
  protein/DNA complex; complexed with mn
2. Domain d1kx3h_: 1kx3 H: [77584]
  Other proteins in same PDB: d1kx3a_, d1kx3b_, d1kx3c_, d1kx3e_, d1kx3f_, d1kx3g_
  protein/DNA complex; complexed with mn
Domain(s) for 1kx4:
1. Domain d1kx4d_: 1kx4 D: [77588]
  Other proteins in same PDB: d1kx4a_, d1kx4b_, d1kx4c_, d1kx4e_, d1kx4f_, d1kx4g_
  protein/DNA complex; complexed with cl, mn
2. Domain d1kx4h_: 1kx4 H: [77592]
  Other proteins in same PDB: d1kx4a_, d1kx4b_, d1kx4c_, d1kx4e_, d1kx4f_, d1kx4g_
  protein/DNA complex; complexed with cl, mn
Domain(s) for 1kx5:
1. Domain d1kx5d_: 1kx5 D: [77596]
  Other proteins in same PDB: d1kx5a_, d1kx5b_, d1kx5c_, d1kx5e_, d1kx5f_, d1kx5g_
  protein/DNA complex; complexed with cl, mn
2. Domain d1kx5h_: 1kx5 H: [77600]
  Other proteins in same PDB: d1kx5a_, d1kx5b_, d1kx5c_, d1kx5e_, d1kx5f_, d1kx5g_
  protein/DNA complex; complexed with cl, mn
Domain(s) for 1m18:
1. Domain d1m18d_: 1m18 D: [78374]
  Other proteins in same PDB: d1m18a_, d1m18b_, d1m18c_, d1m18e_, d1m18f_, d1m18g_
  protein/DNA complex; complexed with 1sz, mn
2. Domain d1m18h_: 1m18 H: [78378]
  Other proteins in same PDB: d1m18a_, d1m18b_, d1m18c_, d1m18e_, d1m18f_, d1m18g_
  protein/DNA complex; complexed with 1sz, mn
Domain(s) for 1m19:
1. Domain d1m19d_: 1m19 D: [78382]
  Other proteins in same PDB: d1m19a_, d1m19b_, d1m19c_, d1m19e_, d1m19f_, d1m19g_
  protein/DNA complex; complexed with imt, mn
2. Domain d1m19h_: 1m19 H: [78386]
  Other proteins in same PDB: d1m19a_, d1m19b_, d1m19c_, d1m19e_, d1m19f_, d1m19g_
  protein/DNA complex; complexed with imt, mn
Domain(s) for 1m1a:
1. Domain d1m1ad_: 1m1a D: [78390]
  Other proteins in same PDB: d1m1aa_, d1m1ab_, d1m1ac_, d1m1ae_, d1m1af_, d1m1ag_
  protein/DNA complex; complexed with imt, mn
2. Domain d1m1ah_: 1m1a H: [78394]
  Other proteins in same PDB: d1m1aa_, d1m1ab_, d1m1ac_, d1m1ae_, d1m1af_, d1m1ag_
  protein/DNA complex; complexed with imt, mn
Domain(s) for 1p34:
1. Domain d1p34d_: 1p34 D: [93973]
  Other proteins in same PDB: d1p34a_, d1p34b_, d1p34c_, d1p34e_, d1p34f_, d1p34g_
  protein/DNA complex; mutant
2. Domain d1p34h_: 1p34 H: [93977]
  Other proteins in same PDB: d1p34a_, d1p34b_, d1p34c_, d1p34e_, d1p34f_, d1p34g_
  protein/DNA complex; mutant
Domain(s) for 1p3a:
1. Domain d1p3ad_: 1p3a D: [93983]
  Other proteins in same PDB: d1p3aa_, d1p3ab_, d1p3ac_, d1p3ae_, d1p3af_, d1p3ag_
  protein/DNA complex; mutant
2. Domain d1p3ah_: 1p3a H: [93987]
  Other proteins in same PDB: d1p3aa_, d1p3ab_, d1p3ac_, d1p3ae_, d1p3af_, d1p3ag_
  protein/DNA complex; mutant
Domain(s) for 1p3b:
1. Domain d1p3bd_: 1p3b D: [93991]
  Other proteins in same PDB: d1p3ba_, d1p3bb_, d1p3bc_, d1p3be_, d1p3bf_, d1p3bg_
  protein/DNA complex; mutant
2. Domain d1p3bh_: 1p3b H: [93995]
  Other proteins in same PDB: d1p3ba_, d1p3bb_, d1p3bc_, d1p3be_, d1p3bf_, d1p3bg_
  protein/DNA complex; mutant
Domain(s) for 1p3f:
1. Domain d1p3fd_: 1p3f D: [94001]
  Other proteins in same PDB: d1p3fa_, d1p3fb_, d1p3fc_, d1p3fe_, d1p3ff_, d1p3fg_
  protein/DNA complex; mutant
2. Domain d1p3fh_: 1p3f H: [94005]
  Other proteins in same PDB: d1p3fa_, d1p3fb_, d1p3fc_, d1p3fe_, d1p3ff_, d1p3fg_
  protein/DNA complex; mutant
Domain(s) for 1p3g:
1. Domain d1p3gd_: 1p3g D: [94009]
  Other proteins in same PDB: d1p3ga_, d1p3gb_, d1p3gc_, d1p3ge_, d1p3gf_, d1p3gg_
  protein/DNA complex; mutant
2. Domain d1p3gh_: 1p3g H: [94013]
  Other proteins in same PDB: d1p3ga_, d1p3gb_, d1p3gc_, d1p3ge_, d1p3gf_, d1p3gg_
  protein/DNA complex; mutant
Domain(s) for 1p3i:
1. Domain d1p3id_: 1p3i D: [94017]
  Other proteins in same PDB: d1p3ia_, d1p3ib_, d1p3ic_, d1p3ie_, d1p3if_, d1p3ig_
  protein/DNA complex; mutant
2. Domain d1p3ih_: 1p3i H: [94021]
  Other proteins in same PDB: d1p3ia_, d1p3ib_, d1p3ic_, d1p3ie_, d1p3if_, d1p3ig_
  protein/DNA complex; mutant
Domain(s) for 1p3k:
1. Domain d1p3kd_: 1p3k D: [94027]
  Other proteins in same PDB: d1p3ka_, d1p3kb_, d1p3kc_, d1p3ke_, d1p3kf_, d1p3kg_
  protein/DNA complex; mutant
2. Domain d1p3kh_: 1p3k H: [94031]
  Other proteins in same PDB: d1p3ka_, d1p3kb_, d1p3kc_, d1p3ke_, d1p3kf_, d1p3kg_
  protein/DNA complex; mutant
Domain(s) for 1p3l:
1. Domain d1p3ld_: 1p3l D: [94035]
  Other proteins in same PDB: d1p3la_, d1p3lb_, d1p3lc_, d1p3le_, d1p3lf_, d1p3lg_
  protein/DNA complex; mutant
2. Domain d1p3lh_: 1p3l H: [94039]
  Other proteins in same PDB: d1p3la_, d1p3lb_, d1p3lc_, d1p3le_, d1p3lf_, d1p3lg_
  protein/DNA complex; mutant
Domain(s) for 1p3m:
1. Domain d1p3md_: 1p3m D: [94043]
  Other proteins in same PDB: d1p3ma_, d1p3mb_, d1p3mc_, d1p3me_, d1p3mf_, d1p3mg_
  protein/DNA complex; mutant
2. Domain d1p3mh_: 1p3m H: [94047]
  Other proteins in same PDB: d1p3ma_, d1p3mb_, d1p3mc_, d1p3me_, d1p3mf_, d1p3mg_
  protein/DNA complex; mutant
Domain(s) for 1p3o:
1. Domain d1p3od_: 1p3o D: [94052]
  Other proteins in same PDB: d1p3oa_, d1p3ob_, d1p3oc_, d1p3oe_, d1p3of_, d1p3og_
  protein/DNA complex; mutant
2. Domain d1p3oh_: 1p3o H: [94056]
  Other proteins in same PDB: d1p3oa_, d1p3ob_, d1p3oc_, d1p3oe_, d1p3of_, d1p3og_
  protein/DNA complex; mutant
Domain(s) for 1p3p:
1. Domain d1p3pd_: 1p3p D: [94060]
  Other proteins in same PDB: d1p3pa_, d1p3pb_, d1p3pc_, d1p3pe_, d1p3pf_, d1p3pg_
  protein/DNA complex; mutant
2. Domain d1p3ph_: 1p3p H: [94064]
  Other proteins in same PDB: d1p3pa_, d1p3pb_, d1p3pc_, d1p3pe_, d1p3pf_, d1p3pg_
  protein/DNA complex; mutant
Domain(s) for 1s32:
1. Domain d1s32d_: 1s32 D: [98415]
  Other proteins in same PDB: d1s32a_, d1s32b_, d1s32c_, d1s32e_, d1s32f_, d1s32g_
  protein/DNA complex; complexed with cl, imt, mn, ogg
2. Domain d1s32h_: 1s32 H: [98419]
  Other proteins in same PDB: d1s32a_, d1s32b_, d1s32c_, d1s32e_, d1s32f_, d1s32g_
  protein/DNA complex; complexed with cl, imt, mn, ogg
Domain(s) for 1zbb:
- Domain d1zbbd1: 1zbb D:8-122 [145987]
  Other proteins in same PDB: d1zbba1, d1zbbb1, d1zbbe1, d1zbbf1
  automatically matched to d1kx5d_
  protein/DNA complex
Domain(s) for 1zla:
1. Domain d1zlad_: 1zla D: [125243]
  Other proteins in same PDB: d1zlaa_, d1zlab_, d1zlac1, d1zlae_, d1zlaf_, d1zlag_
  automated match to d1kx5d_
  protein/DNA complex
2. Domain d1zlah_: 1zla H: [125247]
  Other proteins in same PDB: d1zlaa_, d1zlab_, d1zlac1, d1zlae_, d1zlaf_, d1zlag_
  automated match to d1kx5d_
  protein/DNA complex
Domain(s) for 2f8n:
- Domain d2f8nh_: 2f8n H: [133139]
  Other proteins in same PDB: d2f8na_, d2f8nb_, d2f8ne_, d2f8nf_, d2f8ng_, d2f8nk1
  automated match to d1kx5d_
  protein/DNA complex
Domain(s) for 2fj7:
1. Domain d2fj7d1: 2fj7 D:30-122 [133550]
  Other proteins in same PDB: d2fj7a1, d2fj7b1, d2fj7e1, d2fj7f1
  automatically matched to d1s32d_
  protein/DNA complex
2. Domain d2fj7h1: 2fj7 H:30-122 [133553]
  Other proteins in same PDB: d2fj7a1, d2fj7b1, d2fj7e1, d2fj7f1
  automatically matched to d1s32d_
  protein/DNA complex
Domain(s) for 2nzd:
1. Domain d2nzdd_: 2nzd D: [191677]
  Other proteins in same PDB: d2nzda_, d2nzdb_, d2nzdc_, d2nzde_, d2nzdf_, d2nzdg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mn
2. Domain d2nzdh_: 2nzd H: [191678]
  Other proteins in same PDB: d2nzda_, d2nzdb_, d2nzdc_, d2nzde_, d2nzdf_, d2nzdg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mn
Domain(s) for 3b6f:
1. Domain d3b6fd1: 3b6f D:22-122 [154887]
  Other proteins in same PDB: d3b6fa1, d3b6fb1, d3b6fc1, d3b6fe1, d3b6ff1, d3b6fg1
  automatically matched to d1s32d_
  protein/DNA complex; complexed with mn
2. Domain d3b6fh1: 3b6f H:24-122 [154891]
  Other proteins in same PDB: d3b6fa1, d3b6fb1, d3b6fc1, d3b6fe1, d3b6ff1, d3b6fg1
  automatically matched to d1s32d_
  protein/DNA complex; complexed with mn
Domain(s) for 3b6g:
1. Domain d3b6gd1: 3b6g D:22-122 [154895]
  Other proteins in same PDB: d3b6ga1, d3b6gb1, d3b6gc1, d3b6ge1, d3b6gf1, d3b6gg1
  automatically matched to d1s32d_
  protein/DNA complex; complexed with mn
2. Domain d3b6gh1: 3b6g H:24-122 [154899]
  Other proteins in same PDB: d3b6ga1, d3b6gb1, d3b6gc1, d3b6ge1, d3b6gf1, d3b6gg1
  automatically matched to d1s32d_
  protein/DNA complex; complexed with mn
Domain(s) for 3kuy:
1. Domain d3kuyd_: 3kuy D: [191750]
  Other proteins in same PDB: d3kuya_, d3kuyb_, d3kuyc_, d3kuye_, d3kuyf_, d3kuyg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with atv, mn
2. Domain d3kuyh_: 3kuy H: [191752]
  Other proteins in same PDB: d3kuya_, d3kuyb_, d3kuyc_, d3kuye_, d3kuyf_, d3kuyg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with atv, mn

Domain(s) for 3lel:

Domain d3leld_: 3lel D: [191756]
Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_
automated match to d1kx5d_
protein/DNA complex; complexed with mn

Domain d3lelh_: 3lel H: [191759]
Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_
automated match to d1kx5d_
protein/DNA complex; complexed with mn

Domain d3leln_: 3lel N: [191762]
Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_
automated match to d1kx5d_
protein/DNA complex; complexed with mn

Domain d3lelr_: 3lel R: [191765]
Other proteins in same PDB: d3lela_, d3lelb_, d3lelc_, d3lele_, d3lelf_, d3lelg_, d3lelk_, d3lell_, d3lelm_, d3lelo_, d3lelp_, d3lelq_
automated match to d1kx5d_
protein/DNA complex; complexed with mn

Domain(s) for 3lja:
1. Domain d3ljad_: 3lja D: [191767]
  Other proteins in same PDB: d3ljaa_, d3ljab_, d3ljae_, d3ljaf_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mn, so4
2. Domain d3ljah_: 3lja H: [191769]
  Other proteins in same PDB: d3ljaa_, d3ljab_, d3ljae_, d3ljaf_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mn, so4
Domain(s) for 3mgp:
1. Domain d3mgpd_: 3mgp D: [191774]
  Other proteins in same PDB: d3mgpa_, d3mgpb_, d3mgpc_, d3mgpe_, d3mgpf_, d3mgpg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, co
2. Domain d3mgph_: 3mgp H: [191776]
  Other proteins in same PDB: d3mgpa_, d3mgpb_, d3mgpc_, d3mgpe_, d3mgpf_, d3mgpg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, co
Domain(s) for 3mgq:
1. Domain d3mgqd_: 3mgq D: [191778]
  Other proteins in same PDB: d3mgqa_, d3mgqb_, d3mgqc_, d3mgqe_, d3mgqf_, d3mgqg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, ni
2. Domain d3mgqh_: 3mgq H: [191780]
  Other proteins in same PDB: d3mgqa_, d3mgqb_, d3mgqc_, d3mgqe_, d3mgqf_, d3mgqg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, ni
Domain(s) for 3mgr:
1. Domain d3mgrd_: 3mgr D: [191782]
  Other proteins in same PDB: d3mgra_, d3mgrb_, d3mgrc_, d3mgre_, d3mgrf_, d3mgrg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, mn, rb
2. Domain d3mgrh_: 3mgr H: [191784]
  Other proteins in same PDB: d3mgra_, d3mgrb_, d3mgrc_, d3mgre_, d3mgrf_, d3mgrg_
  automated match to d1kx5d_
  protein/DNA complex; complexed with cl, mn, rb
Domain(s) for 3mnn:
1. Domain d3mnnd_: 3mnn D: [191786]
  Other proteins in same PDB: d3mnna_, d3mnnb_, d3mnnc_, d3mnne_, d3mnnf_, d3mnng_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mg, mml, ptw, ru, so4
2. Domain d3mnnh_: 3mnn H: [191788]
  Other proteins in same PDB: d3mnna_, d3mnnb_, d3mnnc_, d3mnne_, d3mnnf_, d3mnng_
  automated match to d1kx5d_
  protein/DNA complex; complexed with mg, mml, ptw, ru, so4
Domain(s) for 3mvd:
1. Domain d3mvdd_: 3mvd D: [191790]
  Other proteins in same PDB: d3mvda_, d3mvdb_, d3mvdc_, d3mvde_, d3mvdf_, d3mvdg_
  automated match to d1kx5d_
  protein/DNA complex
2. Domain d3mvdh_: 3mvd H: [191792]
  Other proteins in same PDB: d3mvda_, d3mvdb_, d3mvdc_, d3mvde_, d3mvdf_, d3mvdg_
  automated match to d1kx5d_
  protein/DNA complex
Domain(s) for 5f99:
1. Domain d5f99d_: 5f99 D: [314328]
  Other proteins in same PDB: d5f99b_, d5f99c_, d5f99f_, d5f99g_
  automated match to d1s32d_
  complexed with cl, mg
2. Domain d5f99h_: 5f99 H: [314005]
  Other proteins in same PDB: d5f99b_, d5f99c_, d5f99f_, d5f99g_
  automated match to d1s32d_
  complexed with cl, mg
Domain(s) for 5omx:
1. Domain d5omxd_: 5omx D: [341629]
  Other proteins in same PDB: d5omxb_, d5omxc_, d5omxf_, d5omxg_
  automated match to d1s32d_
  complexed with cl, mn
2. Domain d5omxh_: 5omx H: [341654]
  Other proteins in same PDB: d5omxb_, d5omxc_, d5omxf_, d5omxg_
  automated match to d1s32d_
  complexed with cl, mn
Domain(s) for 5ong:
1. Domain d5ongd_: 5ong D: [341833]
  Other proteins in same PDB: d5ongb_, d5ongc_, d5ongf_, d5ongg_
  automated match to d1s32d_
  complexed with cl, mn
2. Domain d5ongh_: 5ong H: [341834]
  Other proteins in same PDB: d5ongb_, d5ongc_, d5ongf_, d5ongg_
  automated match to d1s32d_
  complexed with cl, mn
Domain(s) for 5onw:
1. Domain d5onwd_: 5onw D: [341839]
  Other proteins in same PDB: d5onwb_, d5onwc_, d5onwf_, d5onwg_
  automated match to d1s32d_
  complexed with cl, mn
2. Domain d5onwh_: 5onw H: [341843]
  Other proteins in same PDB: d5onwb_, d5onwc_, d5onwf_, d5onwg_
  automated match to d1s32d_
  complexed with cl, mn
Domain(s) for 6k01:
- Domain d6k01d_: 6k01 D: [375732]
  Other proteins in same PDB: d6k01c_
  automated match to d1aoid_
Domain(s) for 6n1z:
1. Domain d6n1zc_: 6n1z C: [366569]
  automated match to d1kx5d_
2. Domain d6n1zf_: 6n1z F: [366579]
  automated match to d1kx5d_
Domain(s) for 7e8i:
1. Domain d7e8id_: 7e8i D: [405268]
  Other proteins in same PDB: d7e8ib_, d7e8ic_, d7e8if_, d7e8ig_, d7e8il_
  automated match to d1kx5d_
  protein/DNA complex
2. Domain d7e8ih_: 7e8i H: [405370]
  Other proteins in same PDB: d7e8ib_, d7e8ic_, d7e8if_, d7e8ig_, d7e8il_
  automated match to d1kx5d_
  protein/DNA complex

More info for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H2B

Timeline for Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H2B:

Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H2B first appeared (with stable ids) in SCOP 1.55
Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H2B appears in SCOPe 2.06
Species African clawed frog (Xenopus laevis) [TaxId:8355] from a.22.1.1 Histone H2B appears in the current release, SCOPe 2.08