SCOPe 2.05: Family a.20.1.1: Peptidoglycan binding domain, PGBD

Lineage for Family a.20.1.1: Peptidoglycan binding domain, PGBD

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.20: PGBD-like [47089] (1 superfamily)
   core: 3 helices; bundle, closed, left-handed twist; parallel

4. Superfamily a.20.1: PGBD-like [47090] (2 families)

5. Family a.20.1.1: Peptidoglycan binding domain, PGBD [47091] (2 proteins)

Proteins:

1. Probable N-acetylmuramoyl-L-alanine amidase YbjR, C-terminal domain [140390] (1 species)

   • Species Escherichia coli [TaxId:562] [140391] (2 PDB entries)
     Uniprot P75820 195-275

2. Zn2+ DD-carboxypeptidase, N-terminal domain [47092] (1 species)
   probable peptidoglycan-binding domain

   • Species Streptomyces albus G [TaxId:1962] [47093] (1 PDB entry)

More info for Family a.20.1.1: Peptidoglycan binding domain, PGBD

Timeline for Family a.20.1.1: Peptidoglycan binding domain, PGBD:

• Family a.20.1.1: Peptidoglycan binding domain, PGBD first appeared (with stable ids) in SCOP 1.55, called Family a.20.1.1: Zn2+ DD-carboxypeptidase, N-terminal domain
  
• Family a.20.1.1: Peptidoglycan binding domain, PGBD appears in SCOPe 2.04
  
• Family a.20.1.1: Peptidoglycan binding domain, PGBD appears in SCOPe 2.06
  
• Family a.20.1.1: Peptidoglycan binding domain, PGBD appears in the current release, SCOPe 2.08