SCOPe 2.04: Protein: Domains B1 and B5 of PheRS-beta, PheT

Lineage for Protein: Domains B1 and B5 of PheRS-beta, PheT

Root: SCOPe 2.04
Class a: All alpha proteins [46456] (285 folds)
Fold a.6: Putative DNA-binding domain [46954] (1 superfamily)
core: 3 helices; architecture is similar to that of the "winged helix" fold but topology is different
Superfamily a.6.1: Putative DNA-binding domain [46955] (8 families)
Family a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT [46956] (1 protein)
duplication: contains two such domains related by pseudo dyad
Protein Domains B1 and B5 of PheRS-beta, PheT [46957] (1 species)

Species:

Thermus thermophilus [TaxId:274] [46958] (11 PDB entries)
identical sequence to Thermus aquaticus, TaxId: 271

Domains for 1b70:
1. Domain d1b70b1: 1b70 B:1-38,B:152-190 [16303]
  Other proteins in same PDB: d1b70a_, d1b70b3, d1b70b4, d1b70b5, d1b70b6
  protein/RNA complex; complexed with mg, phe
2. Domain d1b70b2: 1b70 B:400-474 [16304]
  Other proteins in same PDB: d1b70a_, d1b70b3, d1b70b4, d1b70b5, d1b70b6
  protein/RNA complex; complexed with mg, phe
Domains for 1b7y:
1. Domain d1b7yb1: 1b7y B:1-38,B:152-190 [16301]
  Other proteins in same PDB: d1b7ya_, d1b7yb3, d1b7yb4, d1b7yb5, d1b7yb6
  protein/RNA complex; complexed with fya, mg
2. Domain d1b7yb2: 1b7y B:400-474 [16302]
  Other proteins in same PDB: d1b7ya_, d1b7yb3, d1b7yb4, d1b7yb5, d1b7yb6
  protein/RNA complex; complexed with fya, mg
Domains for 1eiy:
1. Domain d1eiyb1: 1eiy B:1-38,B:152-190 [16305]
  Other proteins in same PDB: d1eiya1, d1eiya2, d1eiyb3, d1eiyb4, d1eiyb5, d1eiyb6
  protein/RNA complex
2. Domain d1eiyb2: 1eiy B:400-474 [16306]
  Other proteins in same PDB: d1eiya1, d1eiya2, d1eiyb3, d1eiyb4, d1eiyb5, d1eiyb6
  protein/RNA complex
Domains for 1jjc:
1. Domain d1jjcb1: 1jjc B:1-38,B:152-190 [66759]
  Other proteins in same PDB: d1jjca_, d1jjcb3, d1jjcb4, d1jjcb5, d1jjcb6
  protein/RNA complex; complexed with fa5, mn, so4
2. Domain d1jjcb2: 1jjc B:400-474 [66760]
  Other proteins in same PDB: d1jjca_, d1jjcb3, d1jjcb4, d1jjcb5, d1jjcb6
  protein/RNA complex; complexed with fa5, mn, so4
Domains for 1pys:
1. Domain d1pysb1: 1pys B:1-38,B:152-190 [16299]
  Other proteins in same PDB: d1pysa_, d1pysb3, d1pysb4, d1pysb5, d1pysb6
  complexed with mg
2. Domain d1pysb2: 1pys B:400-474 [16300]
  Other proteins in same PDB: d1pysa_, d1pysb3, d1pysb4, d1pysb5, d1pysb6
  complexed with mg
Domains for 2akw:
1. Domain d2akwb1: 2akw B:1-38,B:152-190 [126938]
  Other proteins in same PDB: d2akwa_, d2akwb3, d2akwb4, d2akwb5, d2akwb6
  automated match to d1jjcb1
  protein/RNA complex; complexed with 200, mn, so4
2. Domain d2akwb2: 2akw B:400-474 [126939]
  Other proteins in same PDB: d2akwa_, d2akwb3, d2akwb4, d2akwb5, d2akwb6
  automated match to d1jjcb2
  protein/RNA complex; complexed with 200, mn, so4
Domains for 2aly:
1. Domain d2alyb1: 2aly B:1-38,B:152-190 [126988]
  Other proteins in same PDB: d2alya_, d2alyb3, d2alyb4, d2alyb5, d2alyb6
  automated match to d1jjcb1
  protein/RNA complex; complexed with mn, so4, ysa
2. Domain d2alyb2: 2aly B:400-474 [126989]
  Other proteins in same PDB: d2alya_, d2alyb3, d2alyb4, d2alyb5, d2alyb6
  automated match to d1jjcb2
  protein/RNA complex; complexed with mn, so4, ysa
Domains for 2amc:
1. Domain d2amcb1: 2amc B:1-38,B:152-190 [127003]
  Other proteins in same PDB: d2amca_, d2amcb3, d2amcb4, d2amcb5, d2amcb6
  automated match to d1jjcb1
  protein/RNA complex; complexed with mg, so4, tyr
2. Domain d2amcb2: 2amc B:400-474 [127004]
  Other proteins in same PDB: d2amca_, d2amcb3, d2amcb4, d2amcb5, d2amcb6
  automated match to d1jjcb2
  protein/RNA complex; complexed with mg, so4, tyr

Domains for 2iy5:

Domain d2iy5b1: 2iy5 B:1-38,B:152-190 [137794]
Other proteins in same PDB: d2iy5a1, d2iy5a2, d2iy5b3, d2iy5b4, d2iy5b5, d2iy5b6
automatically matched to d1b70b1
protein/RNA complex; complexed with fya, mg

Domain d2iy5b2: 2iy5 B:400-474 [137795]
Other proteins in same PDB: d2iy5a1, d2iy5a2, d2iy5b3, d2iy5b4, d2iy5b5, d2iy5b6
automatically matched to d1b70b2
protein/RNA complex; complexed with fya, mg

Domains for 3hfz:
1. Domain d3hfzb1: 3hfz B:1-38,B:152-190 [211010]
  Other proteins in same PDB: d3hfza_, d3hfzb2, d3hfzb3, d3hfzb5, d3hfzb6
  automated match to d1jjcb1
  complexed with mty
2. Domain d3hfzb4: 3hfz B:400-474 [211013]
  Other proteins in same PDB: d3hfza_, d3hfzb2, d3hfzb3, d3hfzb5, d3hfzb6
  automated match to d1jjcb2
  complexed with mty
Domains for 3teh:
1. Domain d3tehb1: 3teh B:1-38,B:152-190 [216773]
  Other proteins in same PDB: d3teha_, d3tehb2, d3tehb3, d3tehb5, d3tehb6
  automated match to d1jjcb1
  complexed with dah
2. Domain d3tehb4: 3teh B:400-474 [216776]
  Other proteins in same PDB: d3teha_, d3tehb2, d3tehb3, d3tehb5, d3tehb6
  automated match to d1jjcb2
  complexed with dah

More info for Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT

Timeline for Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT:

Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT first appeared (with stable ids) in SCOP 1.55
Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT appears in SCOPe 2.03
Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT appears in SCOPe 2.05
Protein Domains B1 and B5 of PheRS-beta, PheT from a.6.1.1: Domains B1 and B5 of PheRS-beta, PheT appears in the current release, SCOPe 2.08