SCOPe 2.05: Family a.5.2.1: UBA domain

Lineage for Family a.5.2.1: UBA domain

1. Root: SCOPe 2.05

2. Class a: All alpha proteins [46456] (286 folds)

3. Fold a.5: RuvA C-terminal domain-like [46928] (9 superfamilies)
   3 helices; bundle, right-handed twist

4. Superfamily a.5.2: UBA-like [46934] (5 families)

5. Family a.5.2.1: UBA domain [46935] (25 proteins)

Proteins:

1. 4931431F19Rik [140343] (1 species)
   Riken cDNA clone 4931431f19

   • Species Mouse (Mus musculus) [TaxId:10090] [140344] (1 PDB entry)
     Uniprot Q9D4I8 447-507

2. Auxilin-like protein Swa2p [101065] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [101066] (1 PDB entry)

3. Cbl-interacting protein p70, STS1 [140329] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [140330] (1 PDB entry)
     Uniprot Q8TF42 26-76

4. DNA repair protein Hhr23a [46936] (1 species)

   • Species Human (Homo sapiens) [TaxId:9606] [46937] (5 PDB entries)

5. DSK2 [140323] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [140324] (2 PDB entries)
     Uniprot P48510 328-371! Uniprot P48510 328-373

6. Endocytic protein Ede1, YBL047C [158358] (1 species)

   • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [158359] (1 PDB entry)
     Uniprot P34216 1339-1381

7. Migration-inducing protein 19 NBR1 [140337] (1 species)
   Next to Brca1 gene 1

   • Species Human (Homo sapiens) [TaxId:9606] [140338] (1 PDB entry)
     Uniprot Q14596 916-956

8. NEDD8 ultimate buster-1 (Nub1) [116824] (1 species)

   • Species Mouse (Mus musculus) [TaxId:10090] [116825] (1 PDB entry)
     Uniprot P54729 469-540

9. Rhomboid family protein At3g58460 [116828] (1 species)

   • Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [116829] (1 PDB entry)
     Uniprot Q8LB17 342-401

10. Sequestosome 1 (Sqstm1) [101063] (1 species)
    ubiquitin-binding protein p62

    • Species Human (Homo sapiens) [TaxId:9606] [101064] (5 PDB entries)

11. Serine/threonine protein kinase LATS2 [140341] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [140342] (1 PDB entry)
      Uniprot Q7TSJ6 98-138

12. Suppressor of T-cell receptor signaling 2 (STS-2) [140335] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [140336] (1 PDB entry)
      Uniprot P57075 20-70

13. Trinucleotide repeat containing 6c protein, TNRC6C [140333] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [140334] (1 PDB entry)
      Uniprot Q86UE5 197-268

14. Tudor domain containing protein 3, TDRD3 [116834] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [116835] (1 PDB entry)
      Uniprot Q9H7E2 194-243

15. UBA-domain protein mud1 [158356] (1 species)

    • Species Fission yeast (Schizosaccharomyces pombe) [TaxId:4896] [158357] (1 PDB entry)
      Uniprot Q10256 295-332

16. UBA/UBX 33.3 kDa protein [116832] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [116833] (1 PDB entry)
      Uniprot Q922Y1 2-52

17. Ubiquilin-3 [140325] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [140326] (1 PDB entry)
      Uniprot Q9H347 615-655

18. Ubiquilin-like protein Ubqlnl [140339] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [140340] (1 PDB entry)
      Uniprot Q14DL0 561-610

19. Ubiquitin carboxyl-terminal hydrolase 25 [109721] (1 species)

    • Species Mouse (Mus musculus) [TaxId:10090] [109722] (1 PDB entry)
      Uniprot P57080 1-67

20. Ubiquitin isopeptidase T [116826] (1 species)

    • Species Thale cress (Arabidopsis thaliana) [TaxId:3702] [116827] (2 PDB entries)
      Uniprot Q9LJT6 594-665; Q8L6Y1 651-710

21. Ubiquitin-associated protein 1, UBAP1 [116830] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [116831] (1 PDB entry)
      Uniprot Q9NZ09 381-430

22. Ubiquitin-associated protein 2-like Ubap2l [140331] (1 species)
    RSGI ruh-015

    • Species Mouse (Mus musculus) [TaxId:10090] [140332] (1 PDB entry)
      Uniprot Q80X50 19-109

23. Ubiquitin-conjugating enzyme E2-25 kDa, C-terminal domain [140327] (1 species)

    • Species Human (Homo sapiens) [TaxId:9606] [140328] (6 PDB entries)
      Uniprot P61086 157-198

24. Ubiquitin-protein ligase ubc1 [109719] (1 species)

    • Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [109720] (1 PDB entry)
      Uniprot P21734

25. automated matches [190533] (3 species)
    not a true protein

    1. Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [187496] (3 PDB entries)

    2. Species Human (Homo sapiens) [TaxId:9606] [255306] (4 PDB entries)

    3. Species Mouse (Mus musculus) [TaxId:10090] [190002] (3 PDB entries)

More info for Family a.5.2.1: UBA domain

Timeline for Family a.5.2.1: UBA domain:

• Family a.5.2.1: UBA domain first appeared (with stable ids) in SCOP 1.55
  
• Family a.5.2.1: UBA domain appears in SCOPe 2.04
  
• Family a.5.2.1: UBA domain appears in SCOPe 2.06
  
• Family a.5.2.1: UBA domain appears in the current release, SCOPe 2.08