Lineage for Protein: N-terminal Zn binding domain of HIV integrase

  1. Root: SCOPe 2.08
  2. Class a: All alpha proteins [46456] (290 folds)
  3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. Superfamily a.4.10: Retroviral integrase, N-terminal Zn binding domain [46919] (3 families) (S)
  5. Family a.4.10.1: HIV/SIV integrase, N-terminal Zn binding domain [46920] (2 proteins)
    Zn-binding site is near the C-terminus
    Pfam PF02022
  6. Protein N-terminal Zn binding domain of HIV integrase [46921] (2 species)

Species:

  1. Human immunodeficiency virus type 1 [TaxId:11676] [46922] (8 PDB entries)
    1. Domains for 1k6y:
      1. Domain d1k6ya1: 1k6y A:1-46 [68239]
        Other proteins in same PDB: d1k6ya2, d1k6yb2, d1k6yc2, d1k6yd2
        complexed with k, po4, zn
      2. Domain d1k6yb1: 1k6y B:1-46 [68241]
        Other proteins in same PDB: d1k6ya2, d1k6yb2, d1k6yc2, d1k6yd2
        complexed with k, po4, zn
      3. Domain d1k6yc1: 1k6y C:1-46 [68243]
        Other proteins in same PDB: d1k6ya2, d1k6yb2, d1k6yc2, d1k6yd2
        complexed with k, po4, zn
      4. Domain d1k6yd1: 1k6y D:1-46 [68245]
        Other proteins in same PDB: d1k6ya2, d1k6yb2, d1k6yc2, d1k6yd2
        complexed with k, po4, zn
    2. Domains for 1wja:
      1. Domain d1wjaa_: 1wja A: [16259]
        complexed with zn
      2. Domain d1wjab_: 1wja B: [16260]
        complexed with zn
    3. Domains for 1wjb:
      1. Domain d1wjba_: 1wjb A: [16265]
        complexed with zn
      2. Domain d1wjbb_: 1wjb B: [16266]
        complexed with zn
    4. Domains for 1wjc:
      1. Domain d1wjca_: 1wjc A: [16261]
        complexed with zn
      2. Domain d1wjcb_: 1wjc B: [16262]
        complexed with zn
    5. Domains for 1wjd:
      1. Domain d1wjda_: 1wjd A: [16269]
        complexed with zn
      2. Domain d1wjdb_: 1wjd B: [16270]
        complexed with zn
    6. Domains for 1wje:
      1. Domain d1wjea_: 1wje A: [16263]
        complexed with cd; mutant
      2. Domain d1wjeb_: 1wje B: [16264]
        complexed with cd; mutant
    7. Domains for 1wjf:
      1. Domain d1wjfa_: 1wjf A: [16267]
        complexed with cd; mutant
      2. Domain d1wjfb_: 1wjf B: [16268]
        complexed with cd; mutant
    8. Domains for 6vrg:
      1. Domain d6vrga1: 6vrg A:1-45 [392786]
        Other proteins in same PDB: d6vrga2, d6vrgb2, d6vrgc2, d6vrgd2
        automated match to d1k6yb1
        complexed with k, po4, zn
      2. Domain d6vrgb1: 6vrg B:1-45 [392795]
        Other proteins in same PDB: d6vrga2, d6vrgb2, d6vrgc2, d6vrgd2
        automated match to d1k6ya1
        complexed with k, po4, zn
      3. Domain d6vrgc1: 6vrg C:1-45 [392807]
        Other proteins in same PDB: d6vrga2, d6vrgb2, d6vrgc2, d6vrgd2
        automated match to d1k6ya1
        complexed with k, po4, zn
      4. Domain d6vrgd1: 6vrg D:1-45 [392819]
        Other proteins in same PDB: d6vrga2, d6vrgb2, d6vrgc2, d6vrgd2
        automated match to d1k6ya1
        complexed with k, po4, zn
  2. Human immunodeficiency virus type 2 [TaxId:11709] [46923] (2 PDB entries)
    1. Domain for 1aub:
    2. Domains for 1e0e:
      1. Domain d1e0ea_: 1e0e A: [59147]
        complexed with zn
      2. Domain d1e0eb_: 1e0e B: [59148]
        complexed with zn

More info for Protein N-terminal Zn binding domain of HIV integrase from a.4.10.1: HIV/SIV integrase, N-terminal Zn binding domain

Timeline for Protein N-terminal Zn binding domain of HIV integrase from a.4.10.1: HIV/SIV integrase, N-terminal Zn binding domain: