SCOPe 2.01: Family a.4.5.4: CAP C-terminal domain-like

Lineage for Family a.4.5.4: CAP C-terminal domain-like

1. Root: SCOPe 2.01

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
   core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down

4. Superfamily a.4.5: "Winged helix" DNA-binding domain [46785] (85 families)
   contains a small beta-sheet (wing)

5. Family a.4.5.4: CAP C-terminal domain-like [46796] (8 proteins)

Proteins:

1. Catabolite gene activator protein (CAP), C-terminal domain [46797] (1 species)
   N-terminal domain has double beta-helix fold

   • Species Escherichia coli [TaxId:562] [46798] (19 PDB entries)

2. Chlorophenol reduction protein CprK [158268] (2 species)

   1. Species Desulfitobacterium dehalogenans [TaxId:36854] [158269] (1 PDB entry)
      Uniprot Q9LAS2 148-226

   2. Species Desulfitobacterium hafniense [TaxId:49338] [158270] (3 PDB entries)
      Uniprot Q18R04 148-227! Uniprot Q18R04 148-229

3. CO-sensing protein CooA, C-terminal domain [46799] (1 species)

   • Species Rhodospirillum rubrum [TaxId:1085] [46800] (1 PDB entry)

4. Cyclic AMP receptor-like protein Vfr [158266] (1 species)

   • Species Pseudomonas aeruginosa [TaxId:287] [158267] (1 PDB entry)
     Uniprot P55222 143-213

5. Listeriolysin regulatory protein PrfA, C-terminal domain [88975] (1 species)

   • Species Listeria monocytogenes [TaxId:1639] [88976] (3 PDB entries)

6. Probable transcription regulator BT4300, C-terminal domain [140231] (1 species)

   • Species Bacteroides thetaiotaomicron [TaxId:818] [140232] (1 PDB entry)
     Uniprot Q89ZS6 148-220

7. Transcriptional regulator PG0396, C-terminal domain [140229] (1 species)

   • Species Porphyromonas gingivalis [TaxId:837] [140230] (1 PDB entry)
     Uniprot Q7MAW7 152-232

8. Transcriptional regulator TTHA1359, C-terminal domain [140233] (1 species)

   • Species Thermus thermophilus [TaxId:274] [140234] (1 PDB entry)
     Uniprot Q5SIL0 118-199

More info for Family a.4.5.4: CAP C-terminal domain-like

Timeline for Family a.4.5.4: CAP C-terminal domain-like:

• Family a.4.5.4: CAP C-terminal domain-like first appeared (with stable ids) in SCOP 1.55
  
• Family a.4.5.4: CAP C-terminal domain-like appears in SCOP 1.75
  
• Family a.4.5.4: CAP C-terminal domain-like appears in SCOPe 2.02
  
• Family a.4.5.4: CAP C-terminal domain-like appears in the current release, SCOPe 2.08