Lineage for Superfamily a.4.1: Homeodomain-like

  1. Root: SCOP 1.71
  2. 530466Class a: All alpha proteins [46456] (226 folds)
  3. 532780Fold a.4: DNA/RNA-binding 3-helical bundle [46688] (14 superfamilies)
    core: 3-helices; bundle, closed or partly opened, right-handed twist; up-and down
  4. 532781Superfamily a.4.1: Homeodomain-like [46689] (13 families) (S)
    consists only of helices

Families:

  1. 532782a.4.1.1: Homeodomain [46690] (28 proteins)
    Pfam 00046
  2. 532926a.4.1.2: Recombinase DNA-binding domain [46728] (5 proteins)
  3. 532956a.4.1.3: Myb/SANT domain [46739] (7 proteins)
  4. 533002a.4.1.4: DNA-binding domain of telomeric protein [46745] (2 proteins)
    part of Pfam 00249 (Myb/SANT domain)
  5. 533014a.4.1.5: Paired domain [46748] (3 proteins)
    duplication: consists of two domains of this fold
  6. 533031a.4.1.6: DNA-binding domain of rap1 [46753] (1 protein)
    duplication: consist of two domains of this fold
  7. 533038a.4.1.7: Centromere-binding [46756] (2 proteins)
    duplication: tandem repeat of two similar domains
  8. 533048a.4.1.8: AraC type transcriptional activator [46759] (2 proteins)
    duplication: consists of two structural repeats bipartite HTH protein
  9. 533063a.4.1.9: Tetracyclin repressor-like, N-terminal domain [46764] (9 proteins)
  10. 533155a.4.1.11: GARP response regulators [81683] (1 protein)
    plant myb-related DNA-binding motif
  11. 533159a.4.1.12: FIS-like [100918] (4 proteins)
  12. 533198a.4.1.13: SLIDE domain [100998] (1 protein)
    myb-related probable DNA-binding motif
  13. 533202a.4.1.14: Middle operon regulator, Mor [109659] (1 protein)
    contains extra N-terminal dimerisation subdomain: alpha-hairpin (27-72) dimer is a four-helical bundle with right-handed twist

More info for Superfamily a.4.1: Homeodomain-like

Timeline for Superfamily a.4.1: Homeodomain-like: