SCOPe 2.08: Protein: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase

Lineage for Protein: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase

Root: SCOPe 2.08
Class a: All alpha proteins [46456] (290 folds)
Fold a.3: Cytochrome c [46625] (1 superfamily)
core: 3 helices; folded leaf, opened
Superfamily a.3.1: Cytochrome c [46626] (9 families)
covalently-bound heme completes the core
Family a.3.1.2: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase [46671] (1 protein)
Protein N-terminal (heme c) domain of cytochrome cd1-nitrite reductase [46672] (4 species)
the C-terminal domain is a 8-bladed beta-propeller

Species:

Paracoccus denitrificans [TaxId:266] [46675] (2 PDB entries)
1. Domains for 1e2r:
  1. Domain d1e2ra1: 1e2r A:36-135 [15953]
    Other proteins in same PDB: d1e2ra2, d1e2rb2
    complexed with cyn, dhe, gol, hec
  2. Domain d1e2rb1: 1e2r B:25-135 [15954]
    Other proteins in same PDB: d1e2ra2, d1e2rb2
    complexed with cyn, dhe, gol, hec
2. Domains for 1qks:
  1. Domain d1qksa1: 1qks A:9-135 [15951]
    Other proteins in same PDB: d1qksa2, d1qksb2
    complexed with dhe, gol, hec, so4
  2. Domain d1qksb1: 1qks B:9-135 [15952]
    Other proteins in same PDB: d1qksa2, d1qksb2
    complexed with dhe, gol, hec, so4
Paracoccus pantotrophus [TaxId:82367] [46673] (11 PDB entries)
formerly Thiosphaera pantotropha
1. Domains for 1aof:
  1. Domain d1aofa1: 1aof A:36-133 [15937]
    Other proteins in same PDB: d1aofa2, d1aofb2
    complexed with dhe, hem, so2
  2. Domain d1aofb1: 1aof B:26-133 [15938]
    Other proteins in same PDB: d1aofa2, d1aofb2
    complexed with dhe, hem, so2
2. Domain for 1aom:
  - Domain d1aomb1: 1aom B:9-133 [15936]
    Other proteins in same PDB: d1aoma1, d1aomb2
    complexed with 2no, dhe, hem, no
3. Domains for 1aoq:
  1. Domain d1aoqa1: 1aoq A:17-133 [15934]
    Other proteins in same PDB: d1aoqa2, d1aoqb2
    complexed with 2no, dhe, hem, no
  2. Domain d1aoqb1: 1aoq B:9-133 [15935]
    Other proteins in same PDB: d1aoqa2, d1aoqb2
    complexed with 2no, dhe, hem, no
4. Domain for 1dy7:
  - Domain d1dy7b1: 1dy7 B:32-135 [15929]
    Other proteins in same PDB: d1dy7a_, d1dy7b2
    complexed with cmo, dhe, gol, hec, so4
5. Domains for 1gq1:
  1. Domain d1gq1a1: 1gq1 A:9-133 [76264]
    Other proteins in same PDB: d1gq1a2, d1gq1b2
    complexed with dhe, gol, hec, so4; mutant
  2. Domain d1gq1b1: 1gq1 B:9-133 [76266]
    Other proteins in same PDB: d1gq1a2, d1gq1b2
    complexed with dhe, gol, hec, so4; mutant
6. Domains for 1h9x:
  1. Domain d1h9xa1: 1h9x A:42-133 [60855]
    Other proteins in same PDB: d1h9xa2, d1h9xb2
    complexed with dhe, hec, nhe, so4
  2. Domain d1h9xb1: 1h9x B:39-133 [60857]
    Other proteins in same PDB: d1h9xa2, d1h9xb2
    complexed with dhe, hec, nhe, so4
7. Domains for 1h9y:
  1. Domain d1h9ya1: 1h9y A:48-133 [60859]
    Other proteins in same PDB: d1h9ya2, d1h9yb2
    complexed with cyn, dhe, hec, so4
  2. Domain d1h9yb1: 1h9y B:49-133 [60861]
    Other proteins in same PDB: d1h9ya2, d1h9yb2
    complexed with cyn, dhe, hec, so4
8. Domains for 1hcm:
  1. Domain d1hcma1: 1hcm A:42-133 [60958]
    Other proteins in same PDB: d1hcma2, d1hcmb2
    complexed with dhe, hec, so4
  2. Domain d1hcmb1: 1hcm B:39-133 [60960]
    Other proteins in same PDB: d1hcma2, d1hcmb2
    complexed with dhe, hec, so4
9. Domains for 1hj3:
  1. Domain d1hj3a1: 1hj3 A:17-133 [15930]
    Other proteins in same PDB: d1hj3a2, d1hj3b2
    complexed with dhe, gol, hec, oxy, so4
  2. Domain d1hj3b1: 1hj3 B:26-133 [15931]
    Other proteins in same PDB: d1hj3a2, d1hj3b2
    complexed with dhe, gol, hec, oxy, so4
10. Domains for 1hj4:
  1. Domain d1hj4a1: 1hj4 A:17-133 [15932]
    Other proteins in same PDB: d1hj4a2, d1hj4b2
    complexed with dhe, gol, hec, so4
  2. Domain d1hj4b1: 1hj4 B:26-133 [15933]
    Other proteins in same PDB: d1hj4a2, d1hj4b2
    complexed with dhe, gol, hec, so4
11. Domains for 1hj5:
  1. Domain d1hj5a1: 1hj5 A:9-133 [15927]
    Other proteins in same PDB: d1hj5a2, d1hj5b2
    complexed with dhe, gol, hec, so4
  2. Domain d1hj5b1: 1hj5 B:9-133 [15928]
    Other proteins in same PDB: d1hj5a2, d1hj5b2
    complexed with dhe, gol, hec, so4
Pseudomonas aeruginosa [TaxId:208964] [395801] (2 PDB entries)
1. Domain for 6tpo:
  - Domain d6tpoa1: 6tpo A:21-117 [395802]
    Other proteins in same PDB: d6tpoa2
    automated match to d1nira1
    complexed with 1pe, bu3, hec
2. Domains for 6tsi:
  1. Domain d6tsia1: 6tsi A:4-117 [395841]
    Other proteins in same PDB: d6tsia2, d6tsib2
    automated match to d1gjqa1
    complexed with cl, dhe, hec, po4
  2. Domain d6tsib1: 6tsi B:4-117 [395843]
    Other proteins in same PDB: d6tsia2, d6tsib2
    automated match to d1gjqa1
    complexed with cl, dhe, hec, po4
Pseudomonas aeruginosa [TaxId:287] [46674] (9 PDB entries)
1. Domains for 1bl9:
  1. Domain d1bl9a1: 1bl9 A:7-117 [15947]
    Other proteins in same PDB: d1bl9a2, d1bl9b2
    complexed with dhe, hec, oh
  2. Domain d1bl9b1: 1bl9 B:7-117 [15948]
    Other proteins in same PDB: d1bl9a2, d1bl9b2
    complexed with dhe, hec, oh
2. Domains for 1gjq:
  1. Domain d1gjqa1: 1gjq A:3-117 [70193]
    Other proteins in same PDB: d1gjqa2, d1gjqb2
    complexed with cyn, dhe, hec
  2. Domain d1gjqb1: 1gjq B:5-117 [70195]
    Other proteins in same PDB: d1gjqa2, d1gjqb2
    complexed with cyn, dhe, hec
3. Domain for 1hzu:
  - Domain d1hzua1: 1hzu A:23-117 [61460]
    Other proteins in same PDB: d1hzua2
    complexed with dhe, hec; mutant
4. Domain for 1hzv:
  - Domain d1hzva1: 1hzv A:23-117 [61462]
    Other proteins in same PDB: d1hzva2
    complexed with dhe, hec, no; mutant
5. Domains for 1n15:
  1. Domain d1n15a1: 1n15 A:6-117 [15943]
    Other proteins in same PDB: d1n15a2, d1n15b2
    complexed with dhe, hec
  2. Domain d1n15b1: 1n15 B:5-117 [15944]
    Other proteins in same PDB: d1n15a2, d1n15b2
    complexed with dhe, hec
6. Domains for 1n50:
  1. Domain d1n50a1: 1n50 A:6-117 [15949]
    Other proteins in same PDB: d1n50a2, d1n50b2
    complexed with dhe, hec
  2. Domain d1n50b1: 1n50 B:5-117 [15950]
    Other proteins in same PDB: d1n50a2, d1n50b2
    complexed with dhe, hec
7. Domains for 1n90:
  1. Domain d1n90a1: 1n90 A:6-117 [15945]
    Other proteins in same PDB: d1n90a2, d1n90b2
    complexed with dhe, hec
  2. Domain d1n90b1: 1n90 B:5-117 [15946]
    Other proteins in same PDB: d1n90a2, d1n90b2
    complexed with dhe, hec
8. Domains for 1nir:
  1. Domain d1nira1: 1nir A:6-117 [15939]
    Other proteins in same PDB: d1nira2, d1nirb2
    complexed with cl, dhe, hec, oh, po4
  2. Domain d1nirb1: 1nir B:5-117 [15940]
    Other proteins in same PDB: d1nira2, d1nirb2
    complexed with cl, dhe, hec, oh, po4
9. Domains for 1nno:
  1. Domain d1nnoa1: 1nno A:5-117 [15941]
    Other proteins in same PDB: d1nnoa2, d1nnob2
    complexed with dhe, hec, no
  2. Domain d1nnob1: 1nno B:5-117 [15942]
    Other proteins in same PDB: d1nnoa2, d1nnob2
    complexed with dhe, hec, no

More info for Protein N-terminal (heme c) domain of cytochrome cd1-nitrite reductase from a.3.1.2: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase

Timeline for Protein N-terminal (heme c) domain of cytochrome cd1-nitrite reductase from a.3.1.2: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase:

Protein N-terminal (heme c) domain of cytochrome cd1-nitrite reductase from a.3.1.2: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase first appeared (with stable ids) in SCOP 1.55
Protein N-terminal (heme c) domain of cytochrome cd1-nitrite reductase from a.3.1.2: N-terminal (heme c) domain of cytochrome cd1-nitrite reductase appears in SCOPe 2.07