Lineage for Protein: Mitochondrial cytochrome c

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1476826Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1476827Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1476828Family a.3.1.1: monodomain cytochrome c [46627] (16 proteins)
  6. 1477026Protein Mitochondrial cytochrome c [46642] (6 species)

Species:

  1. 1477027Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (52 PDB entries)
    Uniprot P00044
    1. Domain for 1chh:
    2. Domain for 1chi:
    3. Domain for 1chj:
    4. Domain for 1cie:
    5. Domain for 1cif:
    6. Domain for 1cig:
    7. Domain for 1cih:
    8. Domain for 1crg:
    9. Domain for 1crh:
    10. Domain for 1cri:
    11. Domain for 1crj:
    12. Domain for 1csu:
    13. Domain for 1csv:
    14. Domain for 1csw:
    15. Domain for 1csx:
    16. Domain for 1cty:
    17. Domain for 1ctz:
    18. Domain for 1fhb:
    19. Domain for 1irv:
    20. Domain for 1irw:
    21. Domain for 1kyo:
    22. Domain for 1lms:
    23. Domain for 1nmi:
    24. Domain for 1rap:
    25. Domain for 1raq:
    26. Domains for 1s6v:
      1. 1477038Domain d1s6vb_: 1s6v B: [98610]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
      2. 1477039Domain d1s6vd_: 1s6v D: [98612]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
    27. Domains for 1u74:
      1. 1477069Domain d1u74b_: 1u74 B: [107705]
        Other proteins in same PDB: d1u74a_, d1u74c_
        complexed with hem, po4, znh
      2. 1477070Domain d1u74d_: 1u74 D: [107707]
        Other proteins in same PDB: d1u74a_, d1u74c_
        complexed with hem, po4, znh
    28. Domain for 1ycc:
    29. Domain for 1yea:
    30. Domain for 1yeb:
    31. Domain for 1yfc:
    32. Domain for 1yic:
    33. Domain for 1ytc:
    34. Domain for 2b0z:
    35. Domains for 2b10:
      1. 1477073Domain d2b10b1: 2b10 B:-4-103 [144943]
        Other proteins in same PDB: d2b10a_, d2b10c_
        complexed with hem, znh
      2. 1477074Domain d2b10d_: 2b10 D: [144944]
        Other proteins in same PDB: d2b10a_, d2b10c_
        automated match to d2b10b1
        complexed with hem, znh
    36. Domains for 2b11:
      1. 1477067Domain d2b11b1: 2b11 B:296-403 [144945]
        Other proteins in same PDB: d2b11a_, d2b11c_
        complexed with hem, znh
      2. 1477068Domain d2b11d_: 2b11 D: [144946]
        Other proteins in same PDB: d2b11a_, d2b11c_
        automated match to d2b11b1
        complexed with hem, znh
    37. Domain for 2b12:
    38. Domain for 2bcn:
    39. Domain for 2gb8:
    40. Domain for 2hv4:
    41. Domain for 2jti:
    42. Domain for 2lir:
    43. Domain for 2lit:
    44. Domain for 2mhm:
    45. Domain for 2orl:
    46. Domains for 2pcc:
      1. 1477062Domain d2pccb_: 2pcc B: [15860]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
      2. 1477063Domain d2pccd_: 2pcc D: [15861]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
    47. Domain for 2ycc:
    48. Domain for 3cx5:
    49. Domain for 3cxh:
    50. Domains for 3tyi:
      1. 1477031Domain d3tyia_: 3tyi A: [192162]
        automated match to d2ycca_
        complexed with hem, t3y
      2. 1477032Domain d3tyib_: 3tyi B: [192163]
        automated match to d2ycca_
        complexed with hem, t3y
    51. Domains for 4mu8:
      1. 1477033Domain d4mu8a_: 4mu8 A: [257106]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
      2. 1477034Domain d4mu8b_: 4mu8 B: [257108]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
    52. Domains for 4n0k:
      1. 1477028Domain d4n0ka_: 4n0k A: [259387]
        automated match to d3tyia_
        complexed with hem, t3y
      2. 1477029Domain d4n0kb_: 4n0k B: [259388]
        automated match to d3tyia_
        complexed with hem, t3y
  2. 1477088Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
    identical sequence to Thunnus alalunga, TaxId: 8235
    1. Domains for 1i54:
      1. 1477092Domain d1i54a_: 1i54 A: [61768]
        complexed with hem, znh
      2. 1477093Domain d1i54b_: 1i54 B: [61769]
        complexed with hem, znh
    2. Domains for 1i55:
      1. 1477094Domain d1i55a_: 1i55 A: [61770]
        complexed with hem, znh
      2. 1477095Domain d1i55b_: 1i55 B: [61771]
        complexed with hem, znh
    3. Domains for 1lfm:
      1. 1477090Domain d1lfma_: 1lfm A: [73883]
        complexed with coh
      2. 1477091Domain d1lfmb_: 1lfm B: [73884]
        complexed with coh
    4. Domains for 3cyt:
      1. 1477096Domain d3cyti_: 3cyt I: [15880]
        complexed with hem
      2. 1477097Domain d3cyto_: 3cyt O: [15879]
        complexed with hem
    5. Domain for 5cyt:
  3. 1477098Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
  4. 1477101Horse (Equus caballus) [TaxId:9796] [46644] (22 PDB entries)
    Uniprot P00004
    1. Domain for 1akk:
    2. Domains for 1crc:
      1. 1477122Domain d1crca_: 1crc A: [15867]
        complexed with hem
      2. 1477123Domain d1crcb_: 1crc B: [15868]
        complexed with hem
    3. Domain for 1fi7:
    4. Domain for 1fi9:
    5. Domain for 1giw:
    6. Domain for 1hrc:
    7. Domain for 1i5t:
    8. Domain for 1lc1:
    9. Domain for 1lc2:
    10. Domain for 1m60:
    11. Domain for 1ocd:
    12. Domain for 1u75:
    13. Domain for 1wej:
    14. Domain for 2frc:
    15. Domain for 2giw:
    16. Domain for 2pcb:
    17. Domains for 3nbs:
      1. 1477118Domain d3nbsa_: 3nbs A: [182127]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      2. 1477119Domain d3nbsb_: 3nbs B: [182128]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      3. 1477120Domain d3nbsc_: 3nbs C: [182129]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      4. 1477121Domain d3nbsd_: 3nbs D: [182130]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
    18. Domains for 3nbt:
      1. 1477112Domain d3nbta_: 3nbt A: [182131]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      2. 1477113Domain d3nbtb_: 3nbt B: [182132]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      3. 1477114Domain d3nbtc_: 3nbt C: [182133]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      4. 1477115Domain d3nbtd_: 3nbt D: [182134]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      5. 1477116Domain d3nbte_: 3nbt E: [182135]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      6. 1477117Domain d3nbtf_: 3nbt F: [182136]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
    19. Domains for 3o1y:
      1. 1477102Domain d3o1ya_: 3o1y A: [182738]
        automated match to d1akka_
        complexed with hec, no3
      2. 1477103Domain d3o1yb_: 3o1y B: [182739]
        automated match to d1akka_
        complexed with hec, no3
      3. 1477104Domain d3o1yc_: 3o1y C: [182740]
        automated match to d1akka_
        complexed with hec, no3
    20. Domains for 3o20:
      1. 1477107Domain d3o20a_: 3o20 A: [182742]
        automated match to d1akka_
        complexed with hec, no3
      2. 1477108Domain d3o20b_: 3o20 B: [182743]
        automated match to d1akka_
        complexed with hec, no3
      3. 1477109Domain d3o20c_: 3o20 C: [182744]
        automated match to d1akka_
        complexed with hec, no3
    21. Domain for 3wc8:
    22. Domain for 3wui:
  5. 1477137Human (Homo sapiens) [TaxId:9606] [109644] (4 PDB entries)
    Uniprot P99999
    1. Domain for 1j3s:
    2. Domains for 3nwv:
      1. 1477146Domain d3nwva_: 3nwv A: [182593]
        automated match to d1j3sa_
        complexed with hem
      2. 1477147Domain d3nwvb_: 3nwv B: [182594]
        automated match to d1j3sa_
        complexed with hem
      3. 1477148Domain d3nwvc_: 3nwv C: [182595]
        automated match to d1j3sa_
        complexed with hem
      4. 1477149Domain d3nwvd_: 3nwv D: [182596]
        automated match to d1j3sa_
        complexed with hem
    3. Domains for 3zcf:
      1. 1477142Domain d3zcfa_: 3zcf A: [228574]
        automated match to d1j3sa_
        complexed with hec
      2. 1477143Domain d3zcfb_: 3zcf B: [228575]
        automated match to d1j3sa_
        complexed with hec
      3. 1477144Domain d3zcfc_: 3zcf C: [228573]
        automated match to d1j3sa_
        complexed with hec
      4. 1477145Domain d3zcfd_: 3zcf D: [228572]
        automated match to d1j3sa_
        complexed with hec
    4. Domains for 3zoo:
      1. 1477138Domain d3zooa_: 3zoo A: [228577]
        automated match to d1j3sa_
        complexed with hem, po4; mutant
      2. 1477139Domain d3zoob_: 3zoo B: [229760]
        automated match to d3zood_
        complexed with hem, po4; mutant
      3. 1477140Domain d3zooc_: 3zoo C: [229761]
        automated match to d3zood_
        complexed with hem, po4; mutant
      4. 1477141Domain d3zood_: 3zoo D: [228576]
        automated match to d1j3sa_
        complexed with hem, po4; mutant
  6. 1477151Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)

More info for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c

Timeline for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c: