Lineage for Protein: Mitochondrial cytochrome c

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1980368Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1980369Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1980370Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)
  6. 1980579Protein Mitochondrial cytochrome c [46642] (7 species)

Species:

  1. 1980580Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (71 PDB entries)
    Uniprot P00044
    1. Domain for 1chh:
    2. Domain for 1chi:
    3. Domain for 1chj:
    4. Domain for 1cie:
    5. Domain for 1cif:
    6. Domain for 1cig:
    7. Domain for 1cih:
    8. Domain for 1crg:
    9. Domain for 1crh:
    10. Domain for 1cri:
    11. Domain for 1crj:
    12. Domain for 1csu:
    13. Domain for 1csv:
    14. Domain for 1csw:
    15. Domain for 1csx:
    16. Domain for 1cty:
    17. Domain for 1ctz:
    18. Domain for 1fhb:
    19. Domain for 1irv:
    20. Domain for 1irw:
    21. Domain for 1kyo:
    22. Domain for 1lms:
    23. Domain for 1nmi:
    24. Domain for 1rap:
    25. Domain for 1raq:
    26. Domains for 1s6v:
      1. 1980593Domain d1s6vb_: 1s6v B: [98610]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
      2. 1980594Domain d1s6vd_: 1s6v D: [98612]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
    27. Domains for 1u74:
      1. 1980632Domain d1u74b_: 1u74 B: [107705]
        Other proteins in same PDB: d1u74a_, d1u74c1, d1u74c2
        complexed with hem, po4, znh
      2. 1980633Domain d1u74d_: 1u74 D: [107707]
        Other proteins in same PDB: d1u74a_, d1u74c1, d1u74c2
        complexed with hem, po4, znh
    28. Domain for 1ycc:
    29. Domain for 1yea:
    30. Domain for 1yeb:
    31. Domain for 1yfc:
    32. Domain for 1yic:
    33. Domain for 1ytc:
    34. Domain for 2b0z:
    35. Domains for 2b10:
      1. 1980636Domain d2b10b1: 2b10 B:-4-103 [144943]
        Other proteins in same PDB: d2b10a_, d2b10c_
        complexed with hem, znh
      2. 1980637Domain d2b10d_: 2b10 D: [144944]
        Other proteins in same PDB: d2b10a_, d2b10c_
        automated match to d2b10b1
        complexed with hem, znh
    36. Domains for 2b11:
      1. 1980627Domain d2b11b1: 2b11 B:296-403 [144945]
        Other proteins in same PDB: d2b11a_, d2b11c_
        complexed with hem, znh
      2. 1980628Domain d2b11d_: 2b11 D: [144946]
        Other proteins in same PDB: d2b11a_, d2b11c_
        automated match to d2b11b1
        complexed with hem, znh
    37. Domain for 2b12:
    38. Domain for 2bcn:
    39. Domain for 2gb8:
    40. Domain for 2hv4:
    41. Domain for 2jti:
    42. Domain for 2lir:
    43. Domain for 2lit:
    44. Domain for 2mhm:
    45. Domains for 2n18:
      1. 1980642Domain d2n18b1: 2n18 B:-4-103 [272659]
        Other proteins in same PDB: d2n18a_, d2n18b2
        automated match to d1s6vb_
        complexed with hec, hem
      2. 1980643Domain d2n18c_: 2n18 C: [272660]
        Other proteins in same PDB: d2n18a_, d2n18b2
        automated match to d1ycca_
        complexed with hec, hem
    46. Domain for 2orl:
    47. Domains for 2pcc:
      1. 1980617Domain d2pccb_: 2pcc B: [15860]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
      2. 1980618Domain d2pccd_: 2pcc D: [15861]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
    48. Domain for 2ycc:
    49. Domain for 3cx5:
    50. Domain for 3cxh:
    51. Domains for 3tyi:
      1. 1980584Domain d3tyia_: 3tyi A: [192162]
        automated match to d2ycca_
        complexed with hem, t3y
      2. 1980585Domain d3tyib_: 3tyi B: [192163]
        automated match to d2ycca_
        complexed with hem, t3y
    52. Domains for 4mu8:
      1. 1980586Domain d4mu8a_: 4mu8 A: [257106]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
      2. 1980587Domain d4mu8b_: 4mu8 B: [257108]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
    53. Domains for 4n0k:
      1. 1980581Domain d4n0ka1: 4n0k A:-5-101 [259387]
        Other proteins in same PDB: d4n0ka2, d4n0kb2
        automated match to d3tyia_
        complexed with hem, t3y
      2. 1980582Domain d4n0kb1: 4n0k B:-5-101 [259388]
        Other proteins in same PDB: d4n0ka2, d4n0kb2
        automated match to d3tyia_
        complexed with hem, t3y
    54. Domains for 4p4q:
      1. 1980624Domain d4p4qb_: 4p4q B: [270330]
        Other proteins in same PDB: d4p4qa_, d4p4qc_
        automated match to d1ycca_
        complexed with hem
      2. 1980625Domain d4p4qd_: 4p4q D: [270328]
        Other proteins in same PDB: d4p4qa_, d4p4qc_
        automated match to d1ycca_
        complexed with hem
    55. Domains for 4q5p:
      1. 1980620Domain d4q5pa_: 4q5p A: [271685]
        automated match to d4mu8a_
        complexed with hem
      2. 1980621Domain d4q5pb_: 4q5p B: [271687]
        automated match to d4mu8a_
        complexed with hem
      3. 1980622Domain d4q5pc_: 4q5p C: [271686]
        automated match to d4mu8a_
        complexed with hem
    56. Domains for 4qao:
      1. 1980629Domain d4qaoa1: 4qao A:-2-101 [275628]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
      2. 1980630Domain d4qaob1: 4qao B:-2-101 [275627]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
      3. 1980631Domain d4qaoc1: 4qao C:-2-101 [275626]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
    57. Domains for 4ye1:
      1. 1980588Domain d4ye1a_: 4ye1 A: [272786]
        automated match to d1ycca_
        complexed with gol, hem, t3y
      2. 1980589Domain d4ye1b_: 4ye1 B: [272787]
        automated match to d1ycca_
        complexed with gol, hem, t3y
    58. Domains for 5cib:
      1. 2276986Domain d5cibb_: 5cib B: [320287]
        Other proteins in same PDB: d5ciba_, d5cibc_
        automated match to d1ycca_
        complexed with 51s, hem
      2. 2276988Domain d5cibd_: 5cib D: [320289]
        Other proteins in same PDB: d5ciba_, d5cibc_
        automated match to d1ycca_
        complexed with 51s, hem
    59. Domains for 5cic:
      1. 2276970Domain d5cicd_: 5cic D: [320271]
        Other proteins in same PDB: d5cica_, d5cicc_
        automated match to d1ycca_
        complexed with 51r, hem
      2. 2277058Domain d5cicb_: 5cic B: [320359]
        Other proteins in same PDB: d5cica_, d5cicc_
        automated match to d1ycca_
        complexed with 51r, hem
    60. Domains for 5cid:
      1. 2276963Domain d5cidd_: 5cid D: [320264]
        Other proteins in same PDB: d5cida_, d5cidc_
        automated match to d1ycca_
        complexed with 51v, hem
      2. 2277003Domain d5cidb_: 5cid B: [320304]
        Other proteins in same PDB: d5cida_, d5cidc_
        automated match to d1ycca_
        complexed with 51v, hem
    61. Domains for 5cie:
      1. 2276968Domain d5cied_: 5cie D: [320269]
        Other proteins in same PDB: d5ciea_, d5ciec_
        automated match to d1ycca_
        complexed with anl, hem
      2. 2277095Domain d5cieb_: 5cie B: [320396]
        Other proteins in same PDB: d5ciea_, d5ciec_
        automated match to d1ycca_
        complexed with anl, hem
    62. Domains for 5cif:
      1. 2276980Domain d5cifb_: 5cif B: [320281]
        Other proteins in same PDB: d5cifa_, d5cifc_
        automated match to d1ycca_
        complexed with hem
      2. 2277005Domain d5cifd_: 5cif D: [320306]
        Other proteins in same PDB: d5cifa_, d5cifc_
        automated match to d1ycca_
        complexed with hem
    63. Domains for 5cig:
      1. 2276960Domain d5cigd_: 5cig D: [320261]
        Other proteins in same PDB: d5ciga_, d5cigc_
        automated match to d1ycca_
        complexed with hem
      2. 2276984Domain d5cigb_: 5cig B: [320285]
        Other proteins in same PDB: d5ciga_, d5cigc_
        automated match to d1ycca_
        complexed with hem
    64. Domains for 5cih:
      1. 2277028Domain d5cihd_: 5cih D: [320329]
        Other proteins in same PDB: d5ciha_, d5cihc_
        automated match to d1ycca_
        complexed with hem
      2. 2277140Domain d5cihb_: 5cih B: [320441]
        Other proteins in same PDB: d5ciha_, d5cihc_
        automated match to d1ycca_
        complexed with hem
    65. Domain for 5kke:
    66. Domains for 5klu:
      1. 2288360Domain d5klub_: 5klu B: [331661]
        automated match to d4mu8a_
        complexed with 6uz, hem, so4
      2. 2288820Domain d5klua_: 5klu A: [332121]
        automated match to d4mu8a_
        complexed with 6uz, hem, so4
    67. Domains for 5kpf:
      1. 2293281Domain d5kpfa1: 5kpf A:-4-103 [336582]
        Other proteins in same PDB: d5kpfa2, d5kpfb2
        automated match to d1s6vb_
        complexed with 6vj, hec, no3
      2. 2293312Domain d5kpfb1: 5kpf B:-4-103 [336613]
        Other proteins in same PDB: d5kpfa2, d5kpfb2
        automated match to d1s6vb_
        complexed with 6vj, hec, no3
    68. Domain for 5lft:
    69. Domains for 5lyc:
      1. 2290838Domain d5lycb1: 5lyc B:-4-103 [334139]
        Other proteins in same PDB: d5lycb2
        automated match to d1s6vb_
        complexed with 7az, hem, so4
      2. 2290871Domain d5lyca_: 5lyc A: [334172]
        Other proteins in same PDB: d5lycb2
        automated match to d1s6vb_
        complexed with 7az, hem, so4
    70. Domains for 5t7h:
      1. 2288807Domain d5t7ha_: 5t7h A: [332108]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      2. 2288829Domain d5t7hd_: 5t7h D: [332130]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      3. 2288860Domain d5t7hb_: 5t7h B: [332161]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      4. 2288863Domain d5t7hc_: 5t7h C: [332164]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
    71. Domains for 5t8w:
      1. 2297710Domain d5t8wa_: 5t8w A: [341011]
        automated match to d1s6vb_
        complexed with cl, hec
      2. 2297761Domain d5t8wb_: 5t8w B: [341062]
        automated match to d1s6vb_
        complexed with cl, hec
  2. 1980653Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
    identical sequence to Thunnus alalunga, TaxId: 8235
    1. Domains for 1i54:
      1. 1980657Domain d1i54a_: 1i54 A: [61768]
        complexed with hem, znh
      2. 1980658Domain d1i54b_: 1i54 B: [61769]
        complexed with hem, znh
    2. Domains for 1i55:
      1. 1980659Domain d1i55a_: 1i55 A: [61770]
        complexed with hem, znh
      2. 1980660Domain d1i55b_: 1i55 B: [61771]
        complexed with hem, znh
    3. Domains for 1lfm:
      1. 1980655Domain d1lfma_: 1lfm A: [73883]
        complexed with coh
      2. 1980656Domain d1lfmb_: 1lfm B: [73884]
        complexed with coh
    4. Domains for 3cyt:
      1. 1980661Domain d3cyti_: 3cyt I: [15880]
        complexed with hem
      2. 1980662Domain d3cyto_: 3cyt O: [15879]
        complexed with hem
    5. Domain for 5cyt:
  3. 1980663Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
  4. 1980666Horse (Equus caballus) [TaxId:9796] [46644] (26 PDB entries)
    Uniprot P00004
    1. Domain for 1akk:
    2. Domains for 1crc:
      1. 1980687Domain d1crca_: 1crc A: [15867]
        complexed with hem
      2. 1980688Domain d1crcb_: 1crc B: [15868]
        complexed with hem
    3. Domain for 1fi7:
    4. Domain for 1fi9:
    5. Domain for 1giw:
    6. Domain for 1hrc:
    7. Domain for 1i5t:
    8. Domain for 1lc1:
    9. Domain for 1lc2:
    10. Domain for 1m60:
    11. Domain for 1ocd:
    12. Domain for 1u75:
    13. Domain for 1wej:
    14. Domain for 2frc:
    15. Domain for 2giw:
    16. Domain for 2n3b:
    17. Domain for 2pcb:
    18. Domains for 3nbs:
      1. 1980683Domain d3nbsa_: 3nbs A: [182127]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      2. 1980684Domain d3nbsb_: 3nbs B: [182128]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      3. 1980685Domain d3nbsc_: 3nbs C: [182129]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      4. 1980686Domain d3nbsd_: 3nbs D: [182130]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
    19. Domains for 3nbt:
      1. 1980677Domain d3nbta_: 3nbt A: [182131]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      2. 1980678Domain d3nbtb_: 3nbt B: [182132]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      3. 1980679Domain d3nbtc_: 3nbt C: [182133]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      4. 1980680Domain d3nbtd_: 3nbt D: [182134]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      5. 1980681Domain d3nbte_: 3nbt E: [182135]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      6. 1980682Domain d3nbtf_: 3nbt F: [182136]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
    20. Domains for 3o1y:
      1. 1980667Domain d3o1ya_: 3o1y A: [182738]
        automated match to d1akka_
        complexed with hec, no3
      2. 1980668Domain d3o1yb_: 3o1y B: [182739]
        automated match to d1akka_
        complexed with hec, no3
      3. 1980669Domain d3o1yc_: 3o1y C: [182740]
        automated match to d1akka_
        complexed with hec, no3
    21. Domains for 3o20:
      1. 1980672Domain d3o20a_: 3o20 A: [182742]
        automated match to d1akka_
        complexed with hec, no3
      2. 1980673Domain d3o20b_: 3o20 B: [182743]
        automated match to d1akka_
        complexed with hec, no3
      3. 1980674Domain d3o20c_: 3o20 C: [182744]
        automated match to d1akka_
        complexed with hec, no3
    22. Domain for 3wc8:
    23. Domain for 3wui:
    24. Domain for 4nfg:
    25. Domains for 4rsz:
      1. 1980690Domain d4rsza_: 4rsz A: [268797]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      2. 1980691Domain d4rszb_: 4rsz B: [268795]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      3. 1980692Domain d4rszc_: 4rsz C: [268796]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      4. 1980693Domain d4rszd_: 4rsz D: [268799]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      5. 1980694Domain d4rsze_: 4rsz E: [268798]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      6. 1980695Domain d4rszf_: 4rsz F: [268800]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
    26. Domains for 5iy5:
      1. 2284630Domain d5iy52_: 5iy5 2: [327931]
        Other proteins in same PDB: d5iy5a_, d5iy5b1, d5iy5b2, d5iy5c_, d5iy5d_, d5iy5e_, d5iy5f_, d5iy5g_, d5iy5h_, d5iy5i_, d5iy5j_, d5iy5k_, d5iy5l_, d5iy5m_, d5iy5n_, d5iy5o1, d5iy5o2, d5iy5p_, d5iy5q_, d5iy5r_, d5iy5s_, d5iy5t_, d5iy5u_, d5iy5v_, d5iy5w_, d5iy5x_, d5iy5y_, d5iy5z_
        automated match to d1wejf_
        complexed with cdl, chd, cu, cua, dmu, edo, hea, hem, mg, na, pek, per, pgv, psc, tgl, unl, zn
      2. 2284728Domain d5iy51_: 5iy5 1: [328029]
        Other proteins in same PDB: d5iy5a_, d5iy5b1, d5iy5b2, d5iy5c_, d5iy5d_, d5iy5e_, d5iy5f_, d5iy5g_, d5iy5h_, d5iy5i_, d5iy5j_, d5iy5k_, d5iy5l_, d5iy5m_, d5iy5n_, d5iy5o1, d5iy5o2, d5iy5p_, d5iy5q_, d5iy5r_, d5iy5s_, d5iy5t_, d5iy5u_, d5iy5v_, d5iy5w_, d5iy5x_, d5iy5y_, d5iy5z_
        automated match to d1wejf_
        complexed with cdl, chd, cu, cua, dmu, edo, hea, hem, mg, na, pek, per, pgv, psc, tgl, unl, zn
  5. 1980710Human (Homo sapiens) [TaxId:9606] [109644] (9 PDB entries)
    Uniprot P99999
    1. Domain for 1j3s:
    2. Domain for 2n3y:
    3. Domain for 2n9i:
    4. Domain for 2n9j:
    5. Domains for 3nwv:
      1. 1980719Domain d3nwva_: 3nwv A: [182593]
        automated match to d1j3sa_
        complexed with hem
      2. 1980720Domain d3nwvb_: 3nwv B: [182594]
        automated match to d1j3sa_
        complexed with hem
      3. 1980721Domain d3nwvc_: 3nwv C: [182595]
        automated match to d1j3sa_
        complexed with hem
      4. 1980722Domain d3nwvd_: 3nwv D: [182596]
        automated match to d1j3sa_
        complexed with hem
    6. Domains for 3zcf:
      1. 1980715Domain d3zcfa_: 3zcf A: [228574]
        automated match to d1j3sa_
        complexed with hec
      2. 1980716Domain d3zcfb_: 3zcf B: [228575]
        automated match to d1j3sa_
        complexed with hec
      3. 1980717Domain d3zcfc_: 3zcf C: [228573]
        automated match to d1j3sa_
        complexed with hec
      4. 1980718Domain d3zcfd_: 3zcf D: [228572]
        automated match to d1j3sa_
        complexed with hec
    7. Domains for 3zoo:
      1. 1980711Domain d3zooa_: 3zoo A: [228577]
        automated match to d1j3sa_
        complexed with hec, po4; mutant
      2. 1980712Domain d3zoob_: 3zoo B: [229760]
        automated match to d3zood_
        complexed with hec, po4; mutant
      3. 1980713Domain d3zooc_: 3zoo C: [229761]
        automated match to d3zood_
        complexed with hec, po4; mutant
      4. 1980714Domain d3zood_: 3zoo D: [228576]
        automated match to d1j3sa_
        complexed with hec, po4; mutant
    8. Domains for 5exq:
      1. 2283347Domain d5exqb_: 5exq B: [326648]
        automated match to d3zcfa_
        complexed with hem, so4
      2. 2283374Domain d5exqa_: 5exq A: [326675]
        automated match to d3zcfa_
        complexed with hem, so4
    9. Domains for 5ty3:
      1. 2295367Domain d5ty3b_: 5ty3 B: [338668]
        automated match to d3zcfa_
        complexed with hec, so4
      2. 2295370Domain d5ty3a_: 5ty3 A: [338671]
        automated match to d3zcfa_
        complexed with hec, so4
  6. 1980724Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)
  7. 2270250Ateles sp. [TaxId:9511] [313555] (1 PDB entry)

More info for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c

Timeline for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c: