Lineage for Protein: Mitochondrial cytochrome c

  1. Root: SCOPe 2.07
  2. 2299346Class a: All alpha proteins [46456] (289 folds)
  3. 2303644Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 2303645Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 2303646Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)
  6. 2303863Protein Mitochondrial cytochrome c [46642] (7 species)

Species:

  1. 2303864Ateles sp. [TaxId:9511] [313555] (1 PDB entry)
  2. 2303867Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (76 PDB entries)
    Uniprot P00044
    1. Domain for 1chh:
    2. Domain for 1chi:
    3. Domain for 1chj:
    4. Domain for 1cie:
    5. Domain for 1cif:
    6. Domain for 1cig:
    7. Domain for 1cih:
    8. Domain for 1crg:
    9. Domain for 1crh:
    10. Domain for 1cri:
    11. Domain for 1crj:
    12. Domain for 1csu:
    13. Domain for 1csv:
    14. Domain for 1csw:
    15. Domain for 1csx:
    16. Domain for 1cty:
    17. Domain for 1ctz:
    18. Domain for 1fhb:
    19. Domain for 1irv:
    20. Domain for 1irw:
    21. Domain for 1kyo:
    22. Domain for 1lms:
    23. Domain for 1nmi:
    24. Domain for 1rap:
    25. Domain for 1raq:
    26. Domains for 1s6v:
      1. 2303879Domain d1s6vb_: 1s6v B: [98610]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
      2. 2303880Domain d1s6vd_: 1s6v D: [98612]
        Other proteins in same PDB: d1s6va_, d1s6vc_
        complexed with hem, iod
    27. Domains for 1u74:
      1. 2303935Domain d1u74b_: 1u74 B: [107705]
        Other proteins in same PDB: d1u74a_, d1u74c1, d1u74c2
        complexed with hem, po4, znh
      2. 2303936Domain d1u74d_: 1u74 D: [107707]
        Other proteins in same PDB: d1u74a_, d1u74c1, d1u74c2
        complexed with hem, po4, znh
    28. Domain for 1ycc:
    29. Domain for 1yea:
    30. Domain for 1yeb:
    31. Domain for 1yfc:
    32. Domain for 1yic:
    33. Domain for 1ytc:
    34. Domain for 2b0z:
    35. Domains for 2b10:
      1. 2303949Domain d2b10b1: 2b10 B:-4-103 [144943]
        Other proteins in same PDB: d2b10a_, d2b10c_
        complexed with hem, znh
      2. 2303950Domain d2b10d_: 2b10 D: [144944]
        Other proteins in same PDB: d2b10a_, d2b10c_
        automated match to d2b10b1
        complexed with hem, znh
    36. Domains for 2b11:
      1. 2303939Domain d2b11b1: 2b11 B:296-403 [144945]
        Other proteins in same PDB: d2b11a_, d2b11c_
        complexed with hem, znh
      2. 2303940Domain d2b11d_: 2b11 D: [144946]
        Other proteins in same PDB: d2b11a_, d2b11c_
        automated match to d2b11b1
        complexed with hem, znh
    37. Domain for 2b12:
    38. Domain for 2bcn:
    39. Domain for 2gb8:
    40. Domain for 2hv4:
    41. Domain for 2jti:
    42. Domain for 2lir:
    43. Domain for 2lit:
    44. Domain for 2mhm:
    45. Domains for 2n18:
      1. 2303957Domain d2n18b1: 2n18 B:-4-103 [272659]
        Other proteins in same PDB: d2n18a_, d2n18b2
        automated match to d1s6vb_
        complexed with hec, hem
      2. 2303958Domain d2n18c_: 2n18 C: [272660]
        Other proteins in same PDB: d2n18a_, d2n18b2
        automated match to d1ycca_
        complexed with hec, hem
    46. Domain for 2orl:
    47. Domains for 2pcc:
      1. 2303897Domain d2pccb_: 2pcc B: [15860]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
      2. 2303898Domain d2pccd_: 2pcc D: [15861]
        Other proteins in same PDB: d2pcca_, d2pccc_
        complexed with hem, so4
    48. Domain for 2ycc:
    49. Domain for 3cx5:
    50. Domain for 3cxh:
    51. Domains for 3tyi:
      1. 2303870Domain d3tyia_: 3tyi A: [192162]
        automated match to d2ycca_
        complexed with hem, t3y
      2. 2303871Domain d3tyib_: 3tyi B: [192163]
        automated match to d2ycca_
        complexed with hem, t3y
    52. Domains for 4mu8:
      1. 2303874Domain d4mu8a_: 4mu8 A: [257106]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
      2. 2303875Domain d4mu8b_: 4mu8 B: [257108]
        automated match to d2bcnb_
        complexed with gol, hem, so4, tbu
    53. Domains for 4n0k:
      1. 2303868Domain d4n0ka1: 4n0k A:-5-101 [259387]
        Other proteins in same PDB: d4n0ka2, d4n0kb2
        automated match to d3tyia_
        complexed with hem, t3y
      2. 2303869Domain d4n0kb1: 4n0k B:-5-101 [259388]
        Other proteins in same PDB: d4n0ka2, d4n0kb2
        automated match to d3tyia_
        complexed with hem, t3y
    54. Domains for 4p4q:
      1. 2303910Domain d4p4qb_: 4p4q B: [270330]
        Other proteins in same PDB: d4p4qa_, d4p4qc_
        automated match to d1ycca_
        complexed with hem
      2. 2303911Domain d4p4qd_: 4p4q D: [270328]
        Other proteins in same PDB: d4p4qa_, d4p4qc_
        automated match to d1ycca_
        complexed with hem
    55. Domains for 4q5p:
      1. 2303899Domain d4q5pa_: 4q5p A: [271685]
        automated match to d4mu8a_
        complexed with hem
      2. 2303900Domain d4q5pb_: 4q5p B: [271687]
        automated match to d4mu8a_
        complexed with hem
      3. 2303901Domain d4q5pc_: 4q5p C: [271686]
        automated match to d4mu8a_
        complexed with hem
    56. Domains for 4qao:
      1. 2303932Domain d4qaoa1: 4qao A:-2-101 [275628]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
      2. 2303933Domain d4qaob1: 4qao B:-2-101 [275627]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
      3. 2303934Domain d4qaoc1: 4qao C:-2-101 [275626]
        Other proteins in same PDB: d4qaoa2, d4qaob2, d4qaoc2
        automated match to d4mu8a_
        complexed with hem
    57. Domains for 4ye1:
      1. 2303876Domain d4ye1a_: 4ye1 A: [272786]
        automated match to d1ycca_
        complexed with gol, hem, t3y
      2. 2303877Domain d4ye1b_: 4ye1 B: [272787]
        automated match to d1ycca_
        complexed with gol, hem, t3y
    58. Domains for 5cib:
      1. 2303951Domain d5cibb_: 5cib B: [320287]
        Other proteins in same PDB: d5ciba_, d5cibc_
        automated match to d1ycca_
        complexed with 51s, hem
      2. 2303952Domain d5cibd_: 5cib D: [320289]
        Other proteins in same PDB: d5ciba_, d5cibc_
        automated match to d1ycca_
        complexed with 51s, hem
    59. Domains for 5cic:
      1. 2303926Domain d5cicb_: 5cic B: [320359]
        Other proteins in same PDB: d5cica_, d5cicc_
        automated match to d1ycca_
        complexed with 51r, hem
      2. 2303927Domain d5cicd_: 5cic D: [320271]
        Other proteins in same PDB: d5cica_, d5cicc_
        automated match to d1ycca_
        complexed with 51r, hem
    60. Domains for 5cid:
      1. 2303946Domain d5cidb_: 5cid B: [320304]
        Other proteins in same PDB: d5cida_, d5cidc_
        automated match to d1ycca_
        complexed with 51v, hem
      2. 2303947Domain d5cidd_: 5cid D: [320264]
        Other proteins in same PDB: d5cida_, d5cidc_
        automated match to d1ycca_
        complexed with 51v, hem
    61. Domains for 5cie:
      1. 2303942Domain d5cieb_: 5cie B: [320396]
        Other proteins in same PDB: d5ciea_, d5ciec_
        automated match to d1ycca_
        complexed with anl, hem
      2. 2303943Domain d5cied_: 5cie D: [320269]
        Other proteins in same PDB: d5ciea_, d5ciec_
        automated match to d1ycca_
        complexed with anl, hem
    62. Domains for 5cif:
      1. 2303908Domain d5cifb_: 5cif B: [320281]
        Other proteins in same PDB: d5cifa_, d5cifc_
        automated match to d1ycca_
        complexed with hem
      2. 2303909Domain d5cifd_: 5cif D: [320306]
        Other proteins in same PDB: d5cifa_, d5cifc_
        automated match to d1ycca_
        complexed with hem
    63. Domains for 5cig:
      1. 2303922Domain d5cigb_: 5cig B: [320285]
        Other proteins in same PDB: d5ciga_, d5cigc_
        automated match to d1ycca_
        complexed with hem
      2. 2303923Domain d5cigd_: 5cig D: [320261]
        Other proteins in same PDB: d5ciga_, d5cigc_
        automated match to d1ycca_
        complexed with hem
    64. Domains for 5cih:
      1. 2303944Domain d5cihb_: 5cih B: [320441]
        Other proteins in same PDB: d5ciha_, d5cihc_
        automated match to d1ycca_
        complexed with hem
      2. 2303945Domain d5cihd_: 5cih D: [320329]
        Other proteins in same PDB: d5ciha_, d5cihc_
        automated match to d1ycca_
        complexed with hem
    65. Domain for 5kke:
    66. Domains for 5klu:
      1. 2303920Domain d5klua_: 5klu A: [332121]
        automated match to d4mu8a_
        complexed with 6uz, hem, so4
      2. 2303921Domain d5klub_: 5klu B: [331661]
        automated match to d4mu8a_
        complexed with 6uz, hem, so4
    67. Domains for 5kpf:
      1. 2303888Domain d5kpfa1: 5kpf A:-4-103 [336582]
        Other proteins in same PDB: d5kpfa2, d5kpfb2
        automated match to d1s6vb_
        complexed with 6vj, hec, no3
      2. 2303889Domain d5kpfb1: 5kpf B:-4-103 [336613]
        Other proteins in same PDB: d5kpfa2, d5kpfb2
        automated match to d1s6vb_
        complexed with 6vj, hec, no3
    68. Domain for 5lft:
    69. Domains for 5lyc:
      1. 2303892Domain d5lyca_: 5lyc A: [334172]
        Other proteins in same PDB: d5lycb2
        automated match to d1s6vb_
        complexed with 7az, hem, so4
      2. 2303893Domain d5lycb1: 5lyc B:-4-103 [334139]
        Other proteins in same PDB: d5lycb2
        automated match to d1s6vb_
        complexed with 7az, hem, so4
    70. Domains for 5ncv:
      1. 3046755Domain d5ncva_: 5ncv A: [346817]
        automated match to d5t8wa_
        complexed with 8te, cl, hec
      2. 3046758Domain d5ncvb_: 5ncv B: [346820]
        automated match to d5t8wa_
        complexed with 8te, cl, hec
    71. Domains for 5t7h:
      1. 2303912Domain d5t7ha_: 5t7h A: [332108]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      2. 2303913Domain d5t7hb_: 5t7h B: [332161]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      3. 2303914Domain d5t7hc_: 5t7h C: [332164]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
      4. 2303915Domain d5t7hd_: 5t7h D: [332130]
        automated match to d2bcnb_
        complexed with hem, so4, ze7
    72. Domains for 5t8w:
      1. 2303883Domain d5t8wa_: 5t8w A: [341011]
        automated match to d1s6vb_
        complexed with cl, hec
      2. 2303884Domain d5t8wb_: 5t8w B: [341062]
        automated match to d1s6vb_
        complexed with cl, hec
    73. Domain for 6gd6:
    74. Domain for 6gd7:
    75. Domains for 6gd8:
      1. 3056726Domain d6gd8c1: 6gd8 C:-4-103 [356788]
        Other proteins in same PDB: d6gd8a2, d6gd8b2, d6gd8c2, d6gd8d2
        automated match to d5t8wa_
        complexed with evb, hec
      2. 3056731Domain d6gd8b1: 6gd8 B:-4-103 [356793]
        Other proteins in same PDB: d6gd8a2, d6gd8b2, d6gd8c2, d6gd8d2
        automated match to d5t8wa_
        complexed with evb, hec
      3. 3056734Domain d6gd8d1: 6gd8 D:-4-103 [356796]
        Other proteins in same PDB: d6gd8a2, d6gd8b2, d6gd8c2, d6gd8d2
        automated match to d5t8wa_
        complexed with evb, hec
      4. 3056763Domain d6gd8a1: 6gd8 A:-4-103 [356825]
        Other proteins in same PDB: d6gd8a2, d6gd8b2, d6gd8c2, d6gd8d2
        automated match to d5t8wa_
        complexed with evb, hec
    76. Domain for 6gd9:
  3. 2303968Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
    identical sequence to Thunnus alalunga, TaxId: 8235
    1. Domains for 1i54:
      1. 2303971Domain d1i54a_: 1i54 A: [61768]
        complexed with hem, znh
      2. 2303972Domain d1i54b_: 1i54 B: [61769]
        complexed with hem, znh
    2. Domains for 1i55:
      1. 2303974Domain d1i55a_: 1i55 A: [61770]
        complexed with hem, znh
      2. 2303975Domain d1i55b_: 1i55 B: [61771]
        complexed with hem, znh
    3. Domains for 1lfm:
      1. 2303969Domain d1lfma_: 1lfm A: [73883]
        complexed with coh
      2. 2303970Domain d1lfmb_: 1lfm B: [73884]
        complexed with coh
    4. Domains for 3cyt:
      1. 2303976Domain d3cyti_: 3cyt I: [15880]
        complexed with hem
      2. 2303977Domain d3cyto_: 3cyt O: [15879]
        complexed with hem
    5. Domain for 5cyt:
  4. 2303978Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
  5. 2303981Horse (Equus caballus) [TaxId:9796] [46644] (26 PDB entries)
    Uniprot P00004
    1. Domain for 1akk:
    2. Domains for 1crc:
      1. 2303992Domain d1crca_: 1crc A: [15867]
        complexed with hem
      2. 2303993Domain d1crcb_: 1crc B: [15868]
        complexed with hem
    3. Domain for 1fi7:
    4. Domain for 1fi9:
    5. Domain for 1giw:
    6. Domain for 1hrc:
    7. Domain for 1i5t:
    8. Domain for 1lc1:
    9. Domain for 1lc2:
    10. Domain for 1m60:
    11. Domain for 1ocd:
    12. Domain for 1u75:
    13. Domain for 1wej:
    14. Domain for 2frc:
    15. Domain for 2giw:
    16. Domain for 2n3b:
    17. Domain for 2pcb:
    18. Domains for 3nbs:
      1. 2304009Domain d3nbsa_: 3nbs A: [182127]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      2. 2304010Domain d3nbsb_: 3nbs B: [182128]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      3. 2304011Domain d3nbsc_: 3nbs C: [182129]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
      4. 2304012Domain d3nbsd_: 3nbs D: [182130]
        automated match to d1akka_
        complexed with hem, peg, pg4, po4
    19. Domains for 3nbt:
      1. 2303997Domain d3nbta_: 3nbt A: [182131]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      2. 2303998Domain d3nbtb_: 3nbt B: [182132]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      3. 2303999Domain d3nbtc_: 3nbt C: [182133]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      4. 2304000Domain d3nbtd_: 3nbt D: [182134]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      5. 2304001Domain d3nbte_: 3nbt E: [182135]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
      6. 2304002Domain d3nbtf_: 3nbt F: [182136]
        automated match to d1akka_
        complexed with hem, peg, pg4, pge
    20. Domains for 3o1y:
      1. 2303982Domain d3o1ya_: 3o1y A: [182738]
        automated match to d1akka_
        complexed with hec, no3
      2. 2303983Domain d3o1yb_: 3o1y B: [182739]
        automated match to d1akka_
        complexed with hec, no3
      3. 2303984Domain d3o1yc_: 3o1y C: [182740]
        automated match to d1akka_
        complexed with hec, no3
    21. Domains for 3o20:
      1. 2303987Domain d3o20a_: 3o20 A: [182742]
        automated match to d1akka_
        complexed with hec, no3
      2. 2303988Domain d3o20b_: 3o20 B: [182743]
        automated match to d1akka_
        complexed with hec, no3
      3. 2303989Domain d3o20c_: 3o20 C: [182744]
        automated match to d1akka_
        complexed with hec, no3
    22. Domain for 3wc8:
    23. Domain for 3wui:
    24. Domain for 4nfg:
    25. Domains for 4rsz:
      1. 2304003Domain d4rsza_: 4rsz A: [268797]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      2. 2304004Domain d4rszb_: 4rsz B: [268795]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      3. 2304005Domain d4rszc_: 4rsz C: [268796]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      4. 2304006Domain d4rszd_: 4rsz D: [268799]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      5. 2304007Domain d4rsze_: 4rsz E: [268798]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
      6. 2304008Domain d4rszf_: 4rsz F: [268800]
        automated match to d1wejf_
        complexed with cpt, hem, no3, so4
    26. Domains for 5iy5:
      1. 2303995Domain d5iy51_: 5iy5 1: [328029]
        Other proteins in same PDB: d5iy5a_, d5iy5b1, d5iy5b2, d5iy5c_, d5iy5d_, d5iy5e_, d5iy5f_, d5iy5g_, d5iy5h_, d5iy5i_, d5iy5j_, d5iy5k_, d5iy5l_, d5iy5m_, d5iy5n_, d5iy5o1, d5iy5o2, d5iy5p_, d5iy5q_, d5iy5r_, d5iy5s_, d5iy5t_, d5iy5u_, d5iy5v_, d5iy5w_, d5iy5x_, d5iy5y_, d5iy5z_
        automated match to d1wejf_
        complexed with cdl, chd, cu, cua, dmu, edo, hea, hem, mg, na, pek, per, pgv, psc, tgl, unl, zn
      2. 2303996Domain d5iy52_: 5iy5 2: [327931]
        Other proteins in same PDB: d5iy5a_, d5iy5b1, d5iy5b2, d5iy5c_, d5iy5d_, d5iy5e_, d5iy5f_, d5iy5g_, d5iy5h_, d5iy5i_, d5iy5j_, d5iy5k_, d5iy5l_, d5iy5m_, d5iy5n_, d5iy5o1, d5iy5o2, d5iy5p_, d5iy5q_, d5iy5r_, d5iy5s_, d5iy5t_, d5iy5u_, d5iy5v_, d5iy5w_, d5iy5x_, d5iy5y_, d5iy5z_
        automated match to d1wejf_
        complexed with cdl, chd, cu, cua, dmu, edo, hea, hem, mg, na, pek, per, pgv, psc, tgl, unl, zn
  6. 2304027Human (Homo sapiens) [TaxId:9606] [109644] (10 PDB entries)
    Uniprot P99999
    1. Domain for 1j3s:
    2. Domain for 2n3y:
    3. Domain for 2n9i:
    4. Domain for 2n9j:
    5. Domains for 3nwv:
      1. 2304038Domain d3nwva_: 3nwv A: [182593]
        automated match to d1j3sa_
        complexed with hem
      2. 2304039Domain d3nwvb_: 3nwv B: [182594]
        automated match to d1j3sa_
        complexed with hem
      3. 2304040Domain d3nwvc_: 3nwv C: [182595]
        automated match to d1j3sa_
        complexed with hem
      4. 2304041Domain d3nwvd_: 3nwv D: [182596]
        automated match to d1j3sa_
        complexed with hem
    6. Domains for 3zcf:
      1. 2304034Domain d3zcfa_: 3zcf A: [228574]
        automated match to d1j3sa_
        complexed with hec
      2. 2304035Domain d3zcfb_: 3zcf B: [228575]
        automated match to d1j3sa_
        complexed with hec
      3. 2304036Domain d3zcfc_: 3zcf C: [228573]
        automated match to d1j3sa_
        complexed with hec
      4. 2304037Domain d3zcfd_: 3zcf D: [228572]
        automated match to d1j3sa_
        complexed with hec
    7. Domains for 3zoo:
      1. 2304030Domain d3zooa_: 3zoo A: [228577]
        automated match to d1j3sa_
        complexed with hec, po4; mutant
      2. 2304031Domain d3zoob_: 3zoo B: [229760]
        automated match to d3zood_
        complexed with hec, po4; mutant
      3. 2304032Domain d3zooc_: 3zoo C: [229761]
        automated match to d3zood_
        complexed with hec, po4; mutant
      4. 2304033Domain d3zood_: 3zoo D: [228576]
        automated match to d1j3sa_
        complexed with hec, po4; mutant
    8. Domains for 5exq:
      1. 2304042Domain d5exqa_: 5exq A: [326675]
        automated match to d3zcfa_
        complexed with hem, so4
      2. 2304043Domain d5exqb_: 5exq B: [326648]
        automated match to d3zcfa_
        complexed with hem, so4
    9. Domains for 5o10:
      1. 3046977Domain d5o10a_: 5o10 A: [347039]
        automated match to d5exqa_
        complexed with hec; mutant
      2. 3047000Domain d5o10b_: 5o10 B: [347062]
        automated match to d5exqa_
        complexed with hec; mutant
    10. Domains for 5ty3:
      1. 2304028Domain d5ty3a_: 5ty3 A: [338671]
        automated match to d3zcfa_
        complexed with hec, so4
      2. 2304029Domain d5ty3b_: 5ty3 B: [338668]
        automated match to d3zcfa_
        complexed with hec, so4
  7. 2304048Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)

More info for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c

Timeline for Protein Mitochondrial cytochrome c from a.3.1.1: monodomain cytochrome c: