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Lineage for Protein: Cytochrome c6 (synonym: cytochrome c553)

1. Root: SCOP 1.75B

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.3: Cytochrome c [46625] (1 superfamily) core: 3 helices; folded leaf, opened

4. Superfamily a.3.1: Cytochrome c [46626] (9 families) covalently-bound heme completes the core

5. Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)

6. Protein Cytochrome c6 (synonym: cytochrome c553) [46628] (10 species)

Species:

1. Arthrospira maxima [TaxId:129910] [63457] (2 PDB entries)

   1. Domain for 1f1f:

      • Domain d1f1fa_: 1f1f A: [59571] complexed with hem

   2. Domains for 1kib:

      1. Domain d1kiba_: 1kib A: [72502] complexed with hem

      2. Domain d1kibb_: 1kib B: [72503] complexed with hem

      3. Domain d1kibc_: 1kib C: [72504] complexed with hem

      4. Domain d1kibd_: 1kib D: [72505] complexed with hem

      5. Domain d1kibe_: 1kib E: [72506] complexed with hem

      6. Domain d1kibf_: 1kib F: [72507] complexed with hem

      7. Domain d1kibg_: 1kib G: [72508] complexed with hem

      8. Domain d1kibh_: 1kib H: [72509] complexed with hem

2. Bacillus pasteurii [TaxId:1474] [46629] (5 PDB entries)

   1. Domain for 1b7v:

      • Domain d1b7va_: 1b7v A: [15797] complexed with hem

   2. Domain for 1c75:

      • Domain d1c75a_: 1c75 A: [15796] complexed with hem

   3. Domain for 1k3g:

      • Domain d1k3ga_: 1k3g A: [68111] complexed with hec

   4. Domain for 1k3h:

      • Domain d1k3ha_: 1k3h A: [68112] complexed with hec

   5. Domain for 1n9c:

      • Domain d1n9ca_: 1n9c A: [80340] complexed with hec

3. Desulfovibrio desulfuricans [TaxId:876] [46632] (1 PDB entry)

   • Domain for 2dvh:

     • Domain d2dvha_: 2dvh A: [15803] complexed with hec; mutant

4. Desulfovibrio vulgaris, different strains [TaxId:881] [46631] (2 PDB entries)

   1. Domain for 1c53:

      • Domain d1c53a_: 1c53 A: [15801] complexed with hem

   2. Domain for 1dvh:

      • Domain d1dvha_: 1dvh A: [15802] complexed with hem

5. Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [46633] (2 PDB entries)

   1. Domain for 1cyi:

      • Domain d1cyia_: 1cyi A: [15804] complexed with cd, hem

   2. Domain for 1cyj:

      • Domain d1cyja_: 1cyj A: [15805] complexed with cd, hem

6. Green alga (Cladophora glomerata) [TaxId:162068] [81674] (1 PDB entry)

   • Domain for 1ls9:

     • Domain d1ls9a_: 1ls9 A: [78177] complexed with hem

7. Green alga (Scenedesmus obliquus) [TaxId:3088] [46635] (2 PDB entries)

   1. Domains for 1c6o:

      1. Domain d1c6oa_: 1c6o A: [15808] complexed with hem

      2. Domain d1c6ob_: 1c6o B: [15809] complexed with hem

   2. Domain for 1c6r:

      • Domain d1c6ra_: 1c6r A: [15807] complexed with cd, hem

8. Monoraphidium braunii [TaxId:34112] [46630] (3 PDB entries)

   1. Domain for 1a2s:

      • Domain d1a2sa_: 1a2s A: [15800] complexed with hec

   2. Domain for 1ced:

      • Domain d1ceda_: 1ced A: [15799] complexed with hem

   3. Domain for 1ctj:

      • Domain d1ctja_: 1ctj A: [15798] complexed with hem

9. Red alga (Porphyra yezoensis) [TaxId:2788] [63458] (1 PDB entry)

   • Domain for 1gdv:

     • Domain d1gdva_: 1gdv A: [60458] complexed with hem

10. Synechococcus elongatus [TaxId:32046] [46634] (1 PDB entry)

    • Domain for 1c6s:

      • Domain d1c6sa_: 1c6s A: [15806] complexed with hec

More info for Protein Cytochrome c6 (synonym: cytochrome c553) from a.3.1.1: monodomain cytochrome c

Timeline for Protein Cytochrome c6 (synonym: cytochrome c553) from a.3.1.1: monodomain cytochrome c :

Protein Cytochrome c6 (synonym: cytochrome c553) from a.3.1.1: monodomain cytochrome c appears in SCOP 1.75A

Copyright © 1994-2013 The SCOP and Astral authors scop@mrc-lmb.cam.ac.uk and astral@compbio.berkeley.edu