Lineage for Family a.3.1.1: monodomain cytochrome c

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1980368Fold a.3: Cytochrome c [46625] (1 superfamily)
    core: 3 helices; folded leaf, opened
  4. 1980369Superfamily a.3.1: Cytochrome c [46626] (9 families) (S)
    covalently-bound heme completes the core
  5. 1980370Family a.3.1.1: monodomain cytochrome c [46627] (16 protein domains)

Protein Domains:

  1. 1980371Cytochrome c'' [68950] (1 species)
    close homologue of SHP
  2. 1980378Cytochrome c-L (MoxG) [109645] (1 species)
  3. 1980381Cytochrome c2 [46650] (8 species)
    1. 1980382Species Paracoccus denitrificans [TaxId:266] [46657] (2 PDB entries)
    2. 1980385Species Rhodobacter capsulatus [TaxId:1061] [46652] (3 PDB entries)
      Uniprot P00094
    3. 1980391Species Rhodobacter sphaeroides [TaxId:1063] [46653] (5 PDB entries)
    4. 1980399Species Rhodopila globiformis [TaxId:1071] [46656] (1 PDB entry)
    5. 1980402Species Rhodopseudomonas palustris [TaxId:1076] [46655] (4 PDB entries)
    6. 1980413Species Rhodopseudomonas viridis [TaxId:1079] [46654] (3 PDB entries)
    7. 1980417Species Rhodospirillum centenum [TaxId:34018] [68947] (1 PDB entry)
    8. 1980419Species Rhodospirillum rubrum [TaxId:1085] [46651] (2 PDB entries)
  4. 1980422Cytochrome c5 [46658] (1 species)
  5. 1980425Cytochrome c550 [100991] (3 species)
    1. 1980426Species Thermosynechococcus elongatus [TaxId:146786] [100992] (1 PDB entry)
    2. 1980428Species Thermosynechococcus vulcanus [TaxId:32053] [259629] (5 PDB entries)
    3. 2295282Species Thermosynechococcus elongatus [TaxId:197221] [338583] (1 PDB entry)
  6. 1980434Cytochrome c551 [46660] (5 species)
    1. 1980435Species Methylophilus methylotrophus, strain w3a1 [TaxId:17] [46664] (1 PDB entry)
    2. 1980437Species Paracoccus denitrificans [TaxId:266] [46663] (5 PDB entries)
    3. 1980455Species Pseudomonas aeruginosa [TaxId:287] [46662] (4 PDB entries)
    4. 1980460Species Pseudomonas aeruginosa, PA01 [TaxId:208964] [271783] (1 PDB entry)
    5. 1980463Species Pseudomonas stutzeri [TaxId:316] [46661] (3 PDB entries)
  7. 1980467Cytochrome c552 [46636] (6 species)
    1. 1980468Species Hydrogenobacter thermophilus [TaxId:940] [46640] (7 PDB entries)
    2. 1980482Species Nitrosomonas europaea [TaxId:228410] [224843] (1 PDB entry)
    3. 1980484Species Nitrosomonas europaea [TaxId:915] [46641] (3 PDB entries)
    4. 1980505Species Paracoccus denitrificans [TaxId:266] [46639] (5 PDB entries)
    5. 1980517Species Pseudomonas nautica [TaxId:2743] [46638] (1 PDB entry)
    6. 1980526Species Thermus thermophilus [TaxId:274] [46637] (7 PDB entries)
      Uniprot P04164
  8. 1980535Cytochrome c6 (synonym: cytochrome c553) [46628] (10 species)
    1. 1980536Species Arthrospira maxima [TaxId:129910] [63457] (2 PDB entries)
    2. 1980546Species Bacillus pasteurii [TaxId:1474] [46629] (5 PDB entries)
    3. 1980552Species Desulfovibrio desulfuricans [TaxId:876] [46632] (1 PDB entry)
    4. 1980554Species Desulfovibrio vulgaris, different strains [TaxId:881] [46631] (2 PDB entries)
    5. 1980557Species Green alga (Chlamydomonas reinhardtii) [TaxId:3055] [46633] (2 PDB entries)
    6. 1980560Species Green alga (Cladophora glomerata) [TaxId:162068] [81674] (1 PDB entry)
    7. 1980562Species Green alga (Scenedesmus obliquus) [TaxId:3088] [46635] (2 PDB entries)
    8. 1980566Species Monoraphidium braunii [TaxId:34112] [46630] (3 PDB entries)
    9. 1980570Species Red alga (Porphyra yezoensis) [TaxId:2788] [63458] (1 PDB entry)
    10. 1980572Species Synechococcus elongatus [TaxId:32046] [46634] (1 PDB entry)
  9. 1980574Cytochrome ch [46648] (1 species)
  10. 1980579Mitochondrial cytochrome c [46642] (7 species)
    1. 1980580Species Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [46643] (71 PDB entries)
      Uniprot P00044
    2. 1980653Species Bluefin tuna (Thunnus thynnus) [TaxId:8237] [46646] (5 PDB entries)
      identical sequence to Thunnus alalunga, TaxId: 8235
    3. 1980663Species Bonito (Katsuwonus pelamis) [TaxId:8226] [46647] (1 PDB entry)
    4. 1980666Species Horse (Equus caballus) [TaxId:9796] [46644] (26 PDB entries)
      Uniprot P00004
    5. 1980710Species Human (Homo sapiens) [TaxId:9606] [109644] (9 PDB entries)
      Uniprot P99999
    6. 1980724Species Rice embryos (Oryza sativa) [TaxId:4530] [46645] (1 PDB entry)
    7. 2270250Species Ateles sp. [TaxId:9511] [313555] (1 PDB entry)
  11. 1980726Mono-heme c-type cytochrome ScyA [68948] (1 species)
  12. 1980730Mono-heme c-type cytochrome SoxX [81675] (1 species)
  13. 1980742p-Cresol methylhydroxylase, cytochrome c subunit [46669] (1 species)
    the other subunit is a flavoprotein
  14. 1980748Photosystem II associated cytochrome c549 [63459] (2 species)
    1. 1980749Species Arthrospira maxima [TaxId:129910] [63461] (1 PDB entry)
    2. 1980752Species Synechocystis sp. PCC 6803 [TaxId:1148] [63460] (1 PDB entry)
  15. 1980754SHP, an oxygen binding cytochrome c [46667] (1 species)
  16. 1980768automated matches [190113] (17 species)
    not a true protein
    1. 1980769Species Cow (Bos taurus) [TaxId:9913] [187444] (1 PDB entry)
    2. 1980771Species Crithidia fasciculata [TaxId:5656] [189994] (2 PDB entries)
    3. 1980778Species Hizikia fusiformis [TaxId:74103] [188620] (1 PDB entry)
    4. 1980785Species Leishmania major [TaxId:5664] [194459] (2 PDB entries)
    5. 1980788Species Mouse (Mus musculus) [TaxId:10090] [187404] (1 PDB entry)
    6. 1980790Species Paracoccus versutus [TaxId:34007] [187457] (3 PDB entries)
    7. 1980794Species Phaeodactylum tricornutum [TaxId:2850] [188813] (1 PDB entry)
    8. 1980796Species Phormidium laminosum [TaxId:32059] [187369] (2 PDB entries)
    9. 1980800Species Pseudomonas aeruginosa [TaxId:287] [187678] (1 PDB entry)
    10. 1980803Species Pseudomonas putida [TaxId:303] [186836] (1 PDB entry)
    11. 1980806Species Pseudomonas stutzeri [TaxId:96564] [255233] (1 PDB entry)
    12. 1980808Species Thermosynechococcus elongatus [TaxId:197221] [260557] (1 PDB entry)
    13. 1980810Species Thermosynechococcus elongatus [TaxId:32046] [188751] (3 PDB entries)
    14. 1980814Species Thermosynechococcus vulcanus [TaxId:32053] [189921] (1 PDB entry)
    15. 2279172Species Rattus norvegicus [TaxId:10116] [322473] (3 PDB entries)
    16. 2294404Species Pseudomonas aeruginosa [TaxId:208964] [337705] (2 PDB entries)
    17. 2294464Species Hydrogenobacter thermophilus [TaxId:608538] [337765] (2 PDB entries)

More info for Family a.3.1.1: monodomain cytochrome c

Timeline for Family a.3.1.1: monodomain cytochrome c: