Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1473061Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1473062Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1475382Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Proteins:

  1. 1475383Allophycocyanin alpha subunit [88953] (3 species)
    1. 1475384Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 1475391Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 1475393Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 1475395Allophycocyanin beta subunit [88957] (3 species)
    1. 1475396Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 1475403Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 1475405Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 1475407Phycocyanin alpha subunit [88933] (9 species)
    1. 1475408Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 1475411Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 1475418Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 1475420Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 1475424Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 1475449Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 1475462Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 1475464Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 1475473Species Thermosynechococcus elongatus [TaxId:197221] [189582] (1 PDB entry)
  4. 1475475Phycocyanin beta subunit [88940] (8 species)
    1. 1475476Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 1475479Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 1475481Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 1475485Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 1475510Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 1475512Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 1475519Species Thermosynechococcus elongatus [TaxId:197221] [189583] (1 PDB entry)
    8. 1475521Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 1475524Phycoerythrin alpha subunit [88961] (3 species)
    1. 1475525Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 1475528Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 1475531Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 1475534Phycoerythrin beta subunit [88513] (4 species)
    1. 1475535Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 1475542Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 1475545Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 1475548Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 1475551automated matches [190531] (15 species)
    not a true protein
    1. 1475552Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    2. 1475555Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    3. 1475576Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    4. 1475579Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    5. 1475582Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    6. 1475607Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    7. 1475610Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    8. 1475617Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    9. 1475642Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    10. 1475651Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    11. 1475656Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)
    12. 1475669Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    13. 1475682Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    14. 1475713Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    15. 1475718Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: