Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.03
  2. 1253684Class a: All alpha proteins [46456] (284 folds)
  3. 1253685Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1253686Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1255931Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Proteins:

  1. 1255932Allophycocyanin alpha subunit [88953] (3 species)
    1. 1255933Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 1255940Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 1255942Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 1255944Allophycocyanin beta subunit [88957] (3 species)
    1. 1255945Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 1255952Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 1255954Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 1255956Phycocyanin alpha subunit [88933] (8 species)
    1. 1255957Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 1255960Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    3. 1255962Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    4. 1255966Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    5. 1255991Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    6. 1256004Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    7. 1256006Species Synechococcus vulcanus [TaxId:32053] [88938] (7 PDB entries)
    8. 1256014Species Thermosynechococcus elongatus [TaxId:197221] [189582] (1 PDB entry)
  4. 1256016Phycocyanin beta subunit [88940] (8 species)
    1. 1256017Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 1256020Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 1256022Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 1256026Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 1256051Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 1256053Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 1256060Species Thermosynechococcus elongatus [TaxId:197221] [189583] (1 PDB entry)
    8. 1256062Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (1 PDB entry)
  5. 1256064Phycoerythrin alpha subunit [88961] (3 species)
    1. 1256065Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 1256068Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 1256071Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 1256074Phycoerythrin beta subunit [88513] (4 species)
    1. 1256075Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 1256082Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 1256085Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 1256088Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 1256091automated matches [190531] (8 species)
    not a true protein
    1. 1256092Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    2. 1256113Species Mastigocladus laminosus [TaxId:83541] [187515] (2 PDB entries)
    3. 1256118Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    4. 1256127Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    5. 1256132Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)
    6. 1256145Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    7. 1256176Species Synechocystis sp. [TaxId:1111708] [193921] (1 PDB entry)
    8. 1256179Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: