SCOPe 2.02: Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

1. Root: SCOPe 2.02

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.1: Globin-like [46457] (2 superfamilies)
   core: 6 helices; folded leaf, partly opened

4. Superfamily a.1.1: Globin-like [46458] (5 families)

5. Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
   oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
   binds a bilin chromophore

Proteins:

1. Allophycocyanin alpha subunit [88953] (3 species)

   1. Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)

   2. Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)

   3. Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)

2. Allophycocyanin beta subunit [88957] (3 species)

   1. Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)

   2. Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)

   3. Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)

3. Phycocyanin alpha subunit [88933] (8 species)

   1. Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)

   2. Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)

   4. Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)

   5. Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)

   6. Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)

   7. Species Synechococcus vulcanus [TaxId:32053] [88938] (6 PDB entries)

   8. Species Thermosynechococcus elongatus [TaxId:197221] [189582] (1 PDB entry)

4. Phycocyanin beta subunit [88940] (8 species)

   1. Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)

   2. Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)

   4. Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)

   5. Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)

   6. Species Synechococcus vulcanus [TaxId:32053] [88944] (5 PDB entries)

   7. Species Thermosynechococcus elongatus [TaxId:197221] [189583] (1 PDB entry)

   8. Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (1 PDB entry)

5. Phycoerythrin alpha subunit [88961] (3 species)

   1. Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)

   2. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)

   3. Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)

6. Phycoerythrin beta subunit [88513] (4 species)

   1. Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198

   2. Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)

   4. Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)

7. automated matches [190531] (8 species)
   not a true protein

   1. Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)

   2. Species Mastigocladus laminosus [TaxId:83541] [187515] (2 PDB entries)

   3. Species Porphyridium purpureum [TaxId:35688] [194584] (1 PDB entry)

   4. Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)

   5. Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)

   6. Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)

   7. Species Synechocystis sp. [TaxId:1111708] [193921] (1 PDB entry)

   8. Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins:

• Family a.1.1.3: Phycocyanin-like phycobilisome proteins first appeared (with stable ids) in SCOP 1.55, called Family a.1.1.3: Phycocyanins
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in SCOPe 2.01
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in SCOPe 2.03
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in the current release, SCOPe 2.08