SCOP 1.75: Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

1. Root: SCOP 1.75

2. Class a: All alpha proteins [46456] (284 folds)

3. Fold a.1: Globin-like [46457] (2 superfamilies)
   core: 6 helices; folded leaf, partly opened

4. Superfamily a.1.1: Globin-like [46458] (4 families)

5. Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (6 proteins)
   oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
   binds a bilin chromophore

Proteins:

1. Allophycocyanin alpha subunit [88953] (3 species)

   1. Species Cyanobacterium (Mastigocladus laminosus) [TaxId:83541] [88955] (1 PDB entry)

   2. Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)

   3. Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)

2. Allophycocyanin beta subunit [88957] (3 species)

   1. Species Cyanobacterium (Mastigocladus laminosus) [TaxId:83541] [88959] (1 PDB entry)

   2. Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)

   3. Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)

3. Phycocyanin alpha subunit [88933] (7 species)

   1. Species Cyanobacterium (Fremyella diplosiphon) [TaxId:1197] [88937] (1 PDB entry)

   2. Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)

   4. Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)

   5. Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)

   6. Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)

   7. Species Synechococcus vulcanus [TaxId:32053] [88938] (3 PDB entries)

4. Phycocyanin beta subunit [88940] (6 species)

   1. Species Cyanobacterium (Fremyella diplosiphon) [TaxId:1197] [88943] (1 PDB entry)

   2. Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)

   4. Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)

   5. Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)

   6. Species Synechococcus vulcanus [TaxId:32053] [88944] (3 PDB entries)

5. Phycoerythrin alpha subunit [88961] (3 species)

   1. Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)

   2. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)

   3. Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)

6. Phycoerythrin beta subunit [88513] (4 species)

   1. Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198

   2. Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)

   3. Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)

   4. Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins:

• Family a.1.1.3: Phycocyanin-like phycobilisome proteins first appeared (with stable ids) in SCOP 1.55, called Family a.1.1.3: Phycocyanins
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in SCOP 1.73
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in SCOPe 2.01
  
• Family a.1.1.3: Phycocyanin-like phycobilisome proteins appears in the current release, SCOPe 2.08