Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1976410Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1976411Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1978832Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 protein domains)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Protein Domains:

  1. 1978833Allophycocyanin alpha subunit [88953] (3 species)
    1. 1978834Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 1978841Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 1978843Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 1978845Allophycocyanin beta subunit [88957] (3 species)
    1. 1978846Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 1978853Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 1978855Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 1978857Phycocyanin alpha subunit [88933] (9 species)
    1. 1978858Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 1978861Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 1978868Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 1978870Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 1978874Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 1978899Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 1978912Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 1978914Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 1978923Species Thermosynechococcus elongatus [TaxId:197221] [189582] (9 PDB entries)
  4. 1978928Phycocyanin beta subunit [88940] (8 species)
    1. 1978929Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 1978932Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 1978934Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 1978938Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 1978963Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 1978965Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 1978972Species Thermosynechococcus elongatus [TaxId:197221] [189583] (9 PDB entries)
    8. 1978977Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 1978980Phycoerythrin alpha subunit [88961] (3 species)
    1. 1978981Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 1978984Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 1978987Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 1978990Phycoerythrin beta subunit [88513] (4 species)
    1. 1978991Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 1978998Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 1979001Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 1979004Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 1979007automated matches [190531] (18 species)
    not a true protein
    1. 1979008Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    2. 1979011Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    3. 1979032Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    4. 1979039Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    5. 1979042Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    6. 1979067Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    7. 1979074Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    8. 1979081Species Phormidium rubidum [TaxId:865859] [272704] (5 PDB entries)
    9. 1979084Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    10. 1979109Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    11. 1979118Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    12. 1979123Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (2 PDB entries)
    13. 1979136Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    14. 1979149Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    15. 1979180Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    16. 1979186Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)
    17. 2280222Species Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
    18. 2287483Species Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: