Lineage for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

  1. Root: SCOPe 2.08
  2. 2685877Class a: All alpha proteins [46456] (290 folds)
  3. 2685878Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 2685879Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 2688849Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502

Proteins:

  1. 2688850Allophycocyanin alpha subunit [88953] (3 species)
    1. 2688851Species Mastigocladus laminosus [TaxId:83541] [88955] (1 PDB entry)
    2. 2688858Species Red algae (Porphyra yezoensis) [TaxId:2788] [88956] (1 PDB entry)
    3. 2688860Species Spirulina platensis [TaxId:118562] [88954] (1 PDB entry)
  2. 2688862Allophycocyanin beta subunit [88957] (3 species)
    1. 2688863Species Mastigocladus laminosus [TaxId:83541] [88959] (1 PDB entry)
    2. 2688870Species Red algae (Porphyra yezoensis) [TaxId:2788] [88960] (1 PDB entry)
    3. 2688872Species Spirulina platensis [TaxId:118562] [88958] (1 PDB entry)
  3. 2688874Phycocyanin alpha subunit [88933] (10 species)
    1. 2688875Species Fremyella diplosiphon [TaxId:1197] [88937] (1 PDB entry)
    2. 2688878Species Leptolyngbya sp. [TaxId:574115] [256952] (1 PDB entry)
    3. 2688885Species Red alga (Cyanidium caldarium) [TaxId:2771] [88934] (1 PDB entry)
    4. 2688887Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88936] (1 PDB entry)
    5. 2688891Species Spirulina platensis [TaxId:118562] [88939] (2 PDB entries)
    6. 2688916Species Spirulina sp. [TaxId:1157] [158219] (1 PDB entry)
    7. 2688929Species Synechococcus elongatus [TaxId:32046] [88967] (1 PDB entry)
    8. 2688931Species Synechococcus vulcanus [TaxId:32053] [88938] (8 PDB entries)
    9. 2688940Species Thermosynechococcus elongatus [TaxId:146786] [401378] (2 PDB entries)
    10. 2688945Species Thermosynechococcus elongatus [TaxId:197221] [189582] (12 PDB entries)
  4. 2688957Phycocyanin beta subunit [88940] (9 species)
    1. 2688958Species Fremyella diplosiphon [TaxId:1197] [88943] (1 PDB entry)
    2. 2688961Species Red alga (Cyanidium caldarium) [TaxId:2771] [88941] (1 PDB entry)
    3. 2688963Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88942] (1 PDB entry)
    4. 2688967Species Spirulina platensis [TaxId:118562] [88952] (2 PDB entries)
    5. 2688992Species Synechococcus elongatus [TaxId:32046] [88968] (1 PDB entry)
    6. 2688994Species Synechococcus vulcanus [TaxId:32053] [88944] (6 PDB entries)
    7. 2689001Species Thermosynechococcus elongatus [TaxId:146786] [401365] (2 PDB entries)
    8. 2689006Species Thermosynechococcus elongatus [TaxId:197221] [189583] (12 PDB entries)
    9. 2689018Species Thermosynechococcus vulcanus [TaxId:32053] [193917] (2 PDB entries)
  5. 2689021Phycoerythrin alpha subunit [88961] (3 species)
    1. 2689022Species Red alga (Griffithsia monilis) [TaxId:42003] [88511] (1 PDB entry)
    2. 2689025Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88510] (1 PDB entry)
    3. 2689028Species Red algae (Gracilaria chilensis) [TaxId:2775] [88512] (1 PDB entry)
  6. 2689031Phycoerythrin beta subunit [88513] (4 species)
    1. 2689032Species Cryptophyte (Rhodomonas sp. CS24) [TaxId:79257] [46544] (3 PDB entries)
      Uniprot P27198
    2. 2689039Species Red alga (Griffithsia monilis) [TaxId:42003] [88515] (1 PDB entry)
    3. 2689042Species Red alga (Polysiphonia urceolata) [TaxId:65404] [88514] (1 PDB entry)
    4. 2689045Species Red algae (Gracilaria chilensis) [TaxId:2775] [88516] (1 PDB entry)
  7. 2689048automated matches [190531] (23 species)
    not a true protein
    1. 2689049Species Acaryochloris marina [TaxId:155978] [353706] (1 PDB entry)
    2. 2689052Species Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
    3. 2689055Species Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    4. 2689076Species Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
    5. 2689083Species Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
    6. 2689086Species Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
    7. 2689111Species Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
    8. 2689118Species Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    9. 2689125Species Nostoc sp. [TaxId:1180] [370150] (1 PDB entry)
    10. 2689128Species Palmaria palmata [TaxId:2822] [323523] (1 PDB entry)
    11. 2689141Species Phormidium rubidum [TaxId:865859] [272704] (5 PDB entries)
    12. 2689240Species Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
    13. 2689265Species Pseudanabaena sp. [TaxId:1357935] [330784] (1 PDB entry)
    14. 2689278Species Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (5 PDB entries)
    15. 2689294Species Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    16. 2689299Species Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (2 PDB entries)
    17. 2689314Species Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
    18. 2689327Species Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    19. 2689358Species Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    20. 2689364Species Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)
    21. 3084662Species Synechococcus sp. [TaxId:1980980] [420979] (1 PDB entry)
    22. 3085297Species Leptolyngbya sp. [TaxId:1080068] [421614] (3 PDB entries)
    23. 3086106Species Proteomonas sulcata [TaxId:77928] [422423] (1 PDB entry)

More info for Family a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Family a.1.1.3: Phycocyanin-like phycobilisome proteins: