SCOPe 2.06: Protein: Protozoan/bacterial hemoglobin

Lineage for Protein: Protozoan/bacterial hemoglobin

Root: SCOPe 2.06
Class a: All alpha proteins [46456] (289 folds)
Fold a.1: Globin-like [46457] (2 superfamilies)
core: 6 helices; folded leaf, partly opened
Superfamily a.1.1: Globin-like [46458] (5 families)
Family a.1.1.1: Truncated hemoglobin [46459] (2 proteins)
lack the first helix (A)
Protein Protozoan/bacterial hemoglobin [46460] (6 species)

Species:

Bacillus subtilis [TaxId:1423] [116748] (1 PDB entry)
Uniprot O31607 6-124 # YjbI
- Domain for 1ux8:
  - Domain d1ux8a_: 1ux8 A: [113449]
    complexed with cl, cyn, hem
Ciliate (Paramecium caudatum) [TaxId:5885] [46461] (2 PDB entries)
1. Domain for 1dlw:
  - Domain d1dlwa_: 1dlw A: [14982]
    complexed with hem
2. Domain for 1uvy:
  - Domain d1uvya_: 1uvy A: [100068]
    complexed with hem, xe
Green alga (Chlamydomonas eugametos) [TaxId:3054] [46462] (2 PDB entries)
Globin li637
1. Domain for 1dly:
  - Domain d1dlya_: 1dly A: [14983]
    complexed with cyn, edo, hem, so4
2. Domain for 1uvx:
  - Domain d1uvxa_: 1uvx A: [100067]
    complexed with cyn, hem, xe
Mycobacterium tuberculosis, HbN [TaxId:1773] [63437] (8 PDB entries)
Uniprot Q10784
1. Domains for 1idr:
  1. Domain d1idra_: 1idr A: [62301]
    complexed with hem, oxy, po4
  2. Domain d1idrb_: 1idr B: [62302]
    complexed with hem, oxy, po4
2. Domains for 1rte:
  1. Domain d1rtea_: 1rte A: [105096]
    complexed with cyn, hem, so4
  2. Domain d1rteb_: 1rte B: [105097]
    complexed with cyn, hem, so4
3. Domains for 1s56:
  1. Domain d1s56a_: 1s56 A: [105260]
    complexed with cyn, hec, hem, k, po4, xe
  2. Domain d1s56b_: 1s56 B: [105261]
    complexed with cyn, hec, hem, k, po4, xe
4. Domains for 1s61:
  1. Domain d1s61a_: 1s61 A: [105283]
    complexed with cyn, hec, hem, k, nbn, po4
  2. Domain d1s61b_: 1s61 B: [105284]
    complexed with cyn, hec, hem, k, nbn, po4
5. Domains for 2gkm:
  1. Domain d2gkma_: 2gkm A: [164742]
    automated match to d1s56b_
    complexed with cyn, hem, na; mutant
  2. Domain d2gkmb_: 2gkm B: [164743]
    automated match to d1s56b_
    complexed with cyn, hem, na; mutant
6. Domains for 2gkn:
  1. Domain d2gkna_: 2gkn A: [164744]
    automated match to d1s56b_
    complexed with cyn, hem, na; mutant
  2. Domain d2gknb_: 2gkn B: [164745]
    automated match to d1s56b_
    complexed with cyn, hem, na; mutant
7. Domains for 2gl3:
  1. Domain d2gl3a_: 2gl3 A: [164754]
    automated match to d1s56b_
    complexed with cyn, hem, na, po4; mutant
  2. Domain d2gl3b_: 2gl3 B: [164755]
    automated match to d1s56b_
    complexed with cyn, hem, na, po4; mutant
8. Domains for 2gln:
  1. Domain d2glna_: 2gln A: [164760]
    automated match to d1s56b_
    complexed with cyn, hem, na, po4; mutant
  2. Domain d2glnb_: 2gln B: [164761]
    automated match to d1s56b_
    complexed with cyn, hem, na, po4; mutant
Mycobacterium tuberculosis, HbO [TaxId:1773] [88965] (2 PDB entries)
1. Domains for 1ngk:
  1. Domain d1ngka_: 1ngk A: [85673]
    complexed with cyn, hem, so4
  2. Domain d1ngkb_: 1ngk B: [85674]
    complexed with cyn, hem, so4
  3. Domain d1ngkc_: 1ngk C: [85675]
    complexed with cyn, hem, so4
  4. Domain d1ngkd_: 1ngk D: [85676]
    complexed with cyn, hem, so4
  5. Domain d1ngke_: 1ngk E: [85677]
    complexed with cyn, hem, so4
  6. Domain d1ngkf_: 1ngk F: [85678]
    complexed with cyn, hem, so4
  7. Domain d1ngkg_: 1ngk G: [85679]
    complexed with cyn, hem, so4
  8. Domain d1ngkh_: 1ngk H: [85680]
    complexed with cyn, hem, so4
  9. Domain d1ngki_: 1ngk I: [85681]
    complexed with cyn, hem, so4
  10. Domain d1ngkj_: 1ngk J: [85682]
    complexed with cyn, hem, so4
  11. Domain d1ngkk_: 1ngk K: [85683]
    complexed with cyn, hem, so4
  12. Domain d1ngkl_: 1ngk L: [85684]
    complexed with cyn, hem, so4
2. Domains for 2qrw:
  1. Domain d2qrwa_: 2qrw A: [167780]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  2. Domain d2qrwb_: 2qrw B: [167781]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  3. Domain d2qrwc_: 2qrw C: [167782]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  4. Domain d2qrwd_: 2qrw D: [167783]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  5. Domain d2qrwe_: 2qrw E: [167784]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  6. Domain d2qrwf_: 2qrw F: [167785]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  7. Domain d2qrwg_: 2qrw G: [167786]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  8. Domain d2qrwh_: 2qrw H: [167787]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  9. Domain d2qrwi_: 2qrw I: [167788]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  10. Domain d2qrwj_: 2qrw J: [167789]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  11. Domain d2qrwk_: 2qrw K: [167790]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
  12. Domain d2qrwl_: 2qrw L: [167791]
    automated match to d1ngkb_
    complexed with cyn, hem, so4; mutant
Synechocystis sp. PCC 6803 [TaxId:1148] [81667] (7 PDB entries)
Uniprot P73925
1. Domain for 1mwb:
  - Domain d1mwba_: 1mwb A: [79572]
    complexed with hem
2. Domain for 1rtx:
  - Domain d1rtxa_: 1rtx A: [97827]
    complexed with cd, hem, k, so4
3. Domain for 1s69:
  - Domain d1s69a_: 1s69 A: [105305]
    complexed with cyn, flc, hem
4. Domain for 1s6a:
  - Domain d1s6aa_: 1s6a A: [105306]
    complexed with azi, flc, hem
5. Domain for 2hz1:
  - Domain d2hz1a_: 2hz1 A: [136906]
    automated match to d1mwba_
    complexed with cd, hem, so2, so3
6. Domain for 2hz2:
  - Domain d2hz2a_: 2hz2 A: [165335]
    automated match to d1mwba_
    complexed with cd, hem, so4; mutant
7. Domain for 2hz3:
  - Domain d2hz3a_: 2hz3 A: [165336]
    automated match to d1mwba_
    complexed with cd, hem, so2; mutant

More info for Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin

Timeline for Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin:

Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin first appeared (with stable ids) in SCOP 1.55, called Protein Truncated hemoglobin from a.1.1.1: Truncated hemoglobin
Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin appears in SCOPe 2.05
Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin appears in SCOPe 2.07
Protein Protozoan/bacterial hemoglobin from a.1.1.1: Truncated hemoglobin appears in the current release, SCOPe 2.08