SCOPe 2.06: Domain d1hqmc_: 1hqm C:

Lineage for d1hqmc_ (1hqm C:)

1. Root: SCOPe 2.06

2. Class i: Low resolution protein structures [58117] (25 folds)

3. Fold i.8: RNA polymerase [58180] (1 superfamily)

4. Superfamily i.8.1: RNA polymerase [58181] (1 family)

5. Family i.8.1.1: RNA polymerase [58182] (2 proteins)

6. Protein DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits [58183] (1 species)

7. Species Thermus aquaticus [TaxId:271] [58184] (3 PDB entries)

8. Domain d1hqmc_: 1hqm C: [45974]
   complexed with mg, zn

Details for d1hqmc_

PDB Entry: 1hqm, 3.3 Å

PDB Description: crystal structure of thermus aquaticus core rna polymerase-includes complete structure with side-chains (except for disordered regions)- further refined from original deposition-contains additional sequence information

PDB Compounds: (C:) DNA-directed RNA polymerase

SCOPe Domain Sequences for d1hqmc_:

Sequence, based on SEQRES records:

>d1hqmc_ i.8.1.1 (C:) DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits {Thermus aquaticus [TaxId: 271]}
kikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
evvkvdgtriavryedgrlvehplrryarsnqgtafdqrprvrvgqrvkkgdlladgpas
eegflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgper
itrdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgek
ardvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklan
rhgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqry
ispvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspee
qlkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqpl
ggkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsv
pesfrvlvkelqalaldvqtldekdnpvdifegl

Sequence, based on observed residues (ATOM records):

>d1hqmc_ i.8.1.1 (C:) DNA-directed RNA polymerase alpha(2), beta, beta-prime and omega subunits {Thermus aquaticus [TaxId: 271]}
kikrfgrireviplpplteiqvesykkalqadvppekrenvgiqaafketfpieegdkgk
gglvldfleyrigdppfsqdecrekdltyqaplyarlqlihkdtglikedevflghlplm
tedgsfiingadrvivsqihrspgvyftpdparpgryiasiiplpkrgpwidleveasgv
vtmkvnkrkfplvlllrvlgydqetlvrelsaygdlvqglldeavlamrpeeamvrlftl
lrpgdppkkdkalaylfglladpkrydlgeagrykaeeklgvglsgrtlvrfedgefkde
vflptlrylfaltagvpghevddidhlgnrrirtvgelmadqfrvglarlargvrermvm
gspdtltpaklvnsrpleaalreffsrsqlsqfkdetnplsslrhkrrisalgpggltre
ragfdvrdvhrthygricpvetpeganiglitslaayarvdalgfirtpyrrvkngvvte
evvymtaseedrytiaqantplegdriatdrvvarrrgepvivapeevefmdvspkqvfs
lntnlipflehddanralmgsnmqtqavpliraqapvvmtgleervvrdslaalyaeedg
evvkvdgtriavryedgrlvhplrryarsnqgtafdqrprvrvgqrvkkgdlladgpase
egflalgqnvlvaimpfdgynfedaiviseellkrdfytsihieryeieardtklgperi
trdiphlseaalrdldeegivrigaevkpgdilvgrtsfkgeqepspeerllrsifgeka
rdvkdtslrvppgeggivvgrlrlrrgdpgvelkpgvrevvrvfvaqkrklqvgdklanr
hgnkgvvakilpvedmphlpdgtpvdvilnplgvpsrmnlgqilethlglagyflgqryi
spvfdgatepeikellaeafnlyfgkrqgegfgvdkrekevlaraeklglvspgkspeeq
lkelfdlgkvvlydgrtgepfegpivvgqmfimklyhmvedkmharstgpyslitqqplg
gkaqfggqrfgemevwaleaygaahtlqemltiksddiegrnaayqaiikgedvpepsvp
esfrvlvkelqalaldvqtldekdnpvdifegl

Timeline for d1hqmc_:

• d1hqmc_ first appeared (with stable ids) in SCOP 1.55
  
• d1hqmc_ appears in SCOPe 2.05
  
• d1hqmc_ appears in SCOPe 2.07
  
• d1hqmc_ appears in the current release, SCOPe 2.08