SCOPe 2.08: Domain d1aafa_: 1aaf A:

Lineage for d1aafa_ (1aaf A:)

1. Root: SCOPe 2.08

2. Class g: Small proteins [56992] (100 folds)

3. Fold g.40: Retrovirus zinc finger-like domains [57755] (1 superfamily)
   metal(zinc)-bound fold

4. Superfamily g.40.1: Retrovirus zinc finger-like domains [57756] (1 family)

5. Family g.40.1.1: Retrovirus zinc finger-like domains [57757] (6 proteins)

6. Protein HIV nucleocapsid [57760] (2 species)
   duplication: two similar zinc-binding motifs

7. Species Human immunodeficiency virus type 1, different isolates [TaxId:11676] [57761] (12 PDB entries)
   Uniprot P03350 389-429

8. Domain d1aafa_: 1aaf A: [45166]
   complexed with zn
   has additional insertions and/or extensions that are not grouped together

Details for d1aafa_

PDB Entry: 1aaf

PDB Description: nucleocapsid zinc fingers detected in retroviruses: exafs studies on intact viruses and the solution-state structure of the nucleocapsid protein from hiv-1

PDB Compounds: (A:) hiv-1 nucleocapsid protein

SCOPe Domain Sequences for d1aafa_:

Sequence; same for both SEQRES and ATOM records:

>d1aafa_ g.40.1.1 (A:) HIV nucleocapsid {Human immunodeficiency virus type 1, different isolates [TaxId: 11676]}
mqrgnfrnqrkiikcfncgkeghiakncraprkrgcwkcgkeghqmkdcterqan

Timeline for d1aafa_:

• d1aafa_ first appeared (with stable ids) in SCOP 1.55, called d1aaf__
  
• d1aafa_ appears in SCOPe 2.07