SCOPe 2.01: Domain d1f88b_: 1f88 B:

Lineage for d1f88b_ (1f88 B:)

1. Root: SCOPe 2.01

2. Class f: Membrane and cell surface proteins and peptides [56835] (57 folds)

3. Fold f.13: Family A G protein-coupled receptor-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Family A G protein-coupled receptor-like [81321] (2 families)

5. Family f.13.1.2: Rhodopsin-like [81320] (2 proteins)
   Individual TM segments have a number of kinks and distortions

6. Protein Rhodopsin [56876] (1 species)

7. Species Cow (Bos taurus) [TaxId:9913] [56877] (8 PDB entries)
   Uniprot P02699

8. Domain d1f88b_: 1f88 B: [43430]
   complexed with hg, ret, zn

Details for d1f88b_

PDB Entry: 1f88, 2.8 Å

PDB Description: crystal structure of bovine rhodopsin

PDB Compounds: (B:) rhodopsin

SCOPe Domain Sequences for d1f88b_:

Sequence, based on SEQRES records:

>d1f88b_ f.13.1.2 (B:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgkn

Sequence, based on observed residues (ATOM records):

>d1f88b_ f.13.1.2 (B:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpfgenhaimgvaftwvmalacaapplvgwsryipegmqc
scgidyytpheetnnesfviymfvvhfiipliviffcygqltqkaekevtrmviimviaf
licwlpyagvafyifthqgsdfgpifmtipaffaktsavynpviyimmnkqfrncmvttl
ccgkn

Timeline for d1f88b_:

• d1f88b_ first appeared (with stable ids) in SCOP 1.55
  
• d1f88b_ appears in SCOP 1.75
  
• d1f88b_ appears in SCOPe 2.02
  
• d1f88b_ appears in the current release, SCOPe 2.08