SCOP 1.69: Domain d1f88a_: 1f88 A:

Lineage for d1f88a_ (1f88 A:)

1. Root: SCOP 1.69

2. Class f: Membrane and cell surface proteins and peptides [56835] (47 folds)

3. Fold f.13: Family A G protein-coupled receptor-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Family A G protein-coupled receptor-like [81321] (2 families)

5. Family f.13.1.2: Rhodopsin-like [81320] (1 protein)
   Individual TM segments have a number of kinks and distortions

6. Protein Rhodopsin [56876] (1 species)

7. Species Cow (Bos taurus) [TaxId:9913] [56877] (7 PDB entries)

8. Domain d1f88a_: 1f88 A: [43429]

Details for d1f88a_

PDB Entry: 1f88, 2.8 Å

PDB Description: crystal structure of bovine rhodopsin

SCOP Domain Sequences for d1f88a_:

Sequence, based on SEQRES records:

>d1f88a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus)}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaaqqqes
attqkaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsav
ynpviyimmnkqfrncmvttlccgknplgddeasttvsktetsqvapa

Sequence, based on observed residues (ATOM records):

>d1f88a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus)}
mngtegpnfyvpfsnktgvvrspfeapqyylaepwqfsmlaaymfllimlgfpinfltly
vtvqhkklrtplnyillnlavadlfmvfggftttlytslhgyfvfgptgcnlegffatlg
geialwslvvlaieryvvvckpmsnfrfgenhaimgvaftwvmalacaapplvgwsryip
egmqcscgidyytpheetnnesfviymfvvhfiipliviffcygqlvftvkeaaasattq
kaekevtrmviimviaflicwlpyagvafyifthqgsdfgpifmtipaffaktsavynpv
iyimmnkqfrncmvttlccgknpsttvsktetsqvapa

Timeline for d1f88a_:

• d1f88a_ first appeared (with stable ids) in SCOP 1.55
  
• d1f88a_ appears in SCOP 1.67
  
• d1f88a_ appears in SCOP 1.71
  
• d1f88a_ appears in the current release, SCOPe 2.08