SCOPe 2.08: Domain d1ab4a_: 1ab4 A:

Lineage for d1ab4a_ (1ab4 A:)

1. Root: SCOPe 2.08

2. Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)

3. Fold e.11: Type II DNA topoisomerase C-terminal domain-like [56718] (1 superfamily)
   4 domains: (1) toprim alpha/beta; (2) "winged helix"-like; (3) alpha+beta; (4) all-alpha

4. Superfamily e.11.1: Type II DNA topoisomerase C-terminal domain-like [56719] (2 families)

5. Family e.11.1.1: Type II DNA topoisomerase C-terminal domain-like [56720] (3 proteins)
   domain 2 contains the catalytic tyrosine residue

6. Protein DNA Gyrase A [56723] (2 species)

7. Species Escherichia coli [TaxId:562] [56724] (5 PDB entries)

8. Domain d1ab4a_: 1ab4 A: [43251]
   fragment lacking toprim domain 1

Details for d1ab4a_

PDB Entry: 1ab4, 2.8 Å

PDB Description: 59kda fragment of gyrase a from e. coli

PDB Compounds: (A:) gyrase a

SCOPe Domain Sequences for d1ab4a_:

Sequence, based on SEQRES records:

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
vgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydti
vrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleketvdfvdny
dgtekipdvmptkipnllvngssgiavgmatnipphnltevingclayiddedisieglm
ehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevdaktgretiivheipyqvn
karliekiaelvkekrvegisalrdesdkdgmrivievkrdavgevvlnnlysqtqlqvs
fginmvalhhgqpkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalan
idpiielirhaptpaeaktalvanpwqlgnvaamleragddaarpewlepefgvrdglyy
lteqqaqaildlrlqkltgleheklldeykelldqiaellrilgsadrlmevireelelv
reqfgdkrrteit

Sequence, based on observed residues (ATOM records):

>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
vgralpdvrdglkpvhrrvlyamnvlgndwnkaykksarvvgdvigkyhphgdsavydti
vrmaqpfslrymlvdgqgnfgsidgdsaaamryteirlakiahelmadleketvdfvdny
dgtekipdvmptkipnllvngssgiavgmatnipphnltevingclayiddedisieglm
ehipgpdfptaaiingrrgieeayrtgrgkvyiraraevevetiivheipyqvnkarlie
kiaelvkekrvegisalrdesdkdgmriviegevvlnnlysqtqlqvsfginmvalhhgq
pkimnlkdiiaafvrhrrevvtrrtifelrkardrahilealavalanidpiielirhap
tpaeaktalvanpwqlgnvaamledaarpewlepefgvrdglyylteqqaqaildlrlqk
ltgleheklldeykelldqiaellrilgsadrlmevireelelvreqfgdkrrteit

Timeline for d1ab4a_:

• d1ab4a_ first appeared (with stable ids) in SCOP 1.55, called d1ab4__
  
• d1ab4a_ appears in SCOPe 2.07