Lineage for d1d6ma_ (1d6m A:)

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424842Fold e.10: Prokaryotic type I DNA topoisomerase [56711] (1 superfamily)
    4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8
  4. 424843Superfamily e.10.1: Prokaryotic type I DNA topoisomerase [56712] (1 family) (S)
    duplication: the protein chain passing through the domains 2-4 makes two structural repeats
    The active site is formed by the toprim and "winged helix" domains (domains 1 and 4); these two domains are also found in the type II topoisomerase (DNA gyrase A) and in the alpha subunit of topoisomerase IV
  5. 424844Family e.10.1.1: Prokaryotic type I DNA topoisomerase [56713] (3 proteins)
    domain 4 contains the catalytic tyrosine residue
  6. 424861Protein DNA topoisomerase III [56716] (1 species)
  7. 424862Species Escherichia coli [TaxId:562] [56717] (2 PDB entries)
  8. 424864Domain d1d6ma_: 1d6m A: [43248]

Details for d1d6ma_

PDB Entry: 1d6m (more details), 3 Å

PDB Description: crystal structure of e. coli dna topoisomerase iii

SCOP Domain Sequences for d1d6ma_:

Sequence, based on SEQRES records: (download)

>d1d6ma_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli}
mrlfiaekpslaraiadvlpkphrkgdgfiecgngqvvtwcighlleqaqpdaydsryar
wnladlpivpekwqlqprpsvtkqlnvikrflheaseivhagdpdregqllvdevldylq
lapekrqqvqrclindlnpqaveraidrlrsnsefvplcvsalararadwlyginmtray
tilgrnagyqgvlsvgrvqtpvlglvvrrdeeienfvakdffevkahivtpaderftaiw
qpseacepyqdeegrllhrplaehvvnrisgqpaivtsyndkresesaplpfslsalqie
aakrfglsaqnvldicqklyethklityprsdcrylpeehfagrhavmnaisvhapdllp
qpvvdpdirnrcwddkkvdahhaiiptarssainlteneakvynliarqylmqfcpdavf
rkcvieldiakgkfvakarflaeagwrtllgskerdeendgtplpvvakgdellcekgev
verqtqpprhftdatllsamtgiarfvqdkdlkkilratdglgteatragiiellfkrgf
ltkkgryihstdagkalfhslpematrpdmtahwesvltqisekqcryqdfmqplvgtly
qlidqakrt

Sequence, based on observed residues (ATOM records): (download)

>d1d6ma_ e.10.1.1 (A:) DNA topoisomerase III {Escherichia coli}
mrlfiaekpslaraiadvlpkphrkgdgfiecgngqvvtwcighlleqaqpdaydsryar
wnladlpivpekwqlqprpsvtkqlnvikrflheaseivhagdpdregqllvdevldylq
lapekrqqvqrclindlnpqaveraidrlrsnsefvplcvsalararadwlyginmtray
tilggvlsvgrvqtpvlglvvrrdeeienfvakdffevkahivtpaderftaiwqpseac
epyqdeegrllhrplaehvvnrisgqpaivtsyndkresesaplpfslsalqieaakrfg
lsaqnvldicqklyethklityprsdcrylpeehfagrhavmnaisvhapdllpqpvvdp
dirnrcwddkkvdahhaiiptarssainlteneakvynliarqylmqfcpdavfrkcvie
ldiakgkfvakarflaeagwrtllgskerdeendgtplpvvakgdellcekgevverqtq
pprhftdatllsamtgiarfvqdkdlkkilratdglgteatragiiellfkrgfltkkgr
yihstdagkalfhslpematrpdmtahwesvltqisekqcryqdfmqplvgtlyqlidqa
krt

SCOP Domain Coordinates for d1d6ma_:

Click to download the PDB-style file with coordinates for d1d6ma_.
(The format of our PDB-style files is described here.)

Timeline for d1d6ma_: