Lineage for d1cy7a_ (1cy7 A:)

  1. Root: SCOPe 2.07
  2. 2618030Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
  3. 2623922Fold e.10: Prokaryotic type I DNA topoisomerase [56711] (1 superfamily)
    4 domains: (1) Toprim alpha/beta; (2&4) "winged helix"-like; (3) barrel: n=6, S=8
  4. 2623923Superfamily e.10.1: Prokaryotic type I DNA topoisomerase [56712] (2 families) (S)
    duplication: the protein chain passing through the domains 2-4 makes two structural repeats
    The active site is formed by the toprim and "winged helix" domains (domains 1 and 4); these two domains are also found in the type II topoisomerase (DNA gyrase A) and in the alpha subunit of topoisomerase IV
  5. 2623924Family e.10.1.1: Prokaryotic type I DNA topoisomerase [56713] (4 proteins)
    domain 4 contains the catalytic tyrosine residue
  6. 2623925Protein DNA topoisomerase I, 67K N-terminal domain [56714] (1 species)
  7. 2623926Species Escherichia coli [TaxId:562] [56715] (12 PDB entries)
  8. 2623936Domain d1cy7a_: 1cy7 A: [43244]
    protein/DNA complex; complexed with po4, tmp

Details for d1cy7a_

PDB Entry: 1cy7 (more details), 2.4 Å

PDB Description: complex of e.coli dna topoisomerase i with 5'-thymidine monophosphate
PDB Compounds: (A:) DNA topoisomerase I

SCOPe Domain Sequences for d1cy7a_:

Sequence, based on SEQRES records: (download)

>d1cy7a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]}
gkalvivespakaktinkylgsdyvvkssvghirdlptsgsaakksadststktakkpkk
dergalvnrmgvdpwhnweahyevlpgkekvvselkqlaekadhiylatdldregeaiaw
hlreviggddarysrvvfneitknairqafnkpgelnidrvnaqqarrfmdrvvgymvsp
llwkkiarglsagrvqsvavrlvverereikafvpeefwevdastttpsgealalqvthq
ndkpfrpvnkeqtqaavsllekarysvleredkpttskpgapfitstlqqaastrlgfgv
kktmmmaqrlyeagyitymrtdstnlsqdavnmvrgyisdnfgkkylpespnqyaskens
qeaheairpsdvnvmaeslkdmeadaqklyqliwrqfvacqmtpakydsttltvgagdfr
lkargrilrfdgwtkvmpalrkgdedrilpavnkgdaltlveltpaqhftkpparfseas
lvkelekrgigrpstyasiistiqdrgyvrvenrrfyaekmgeivtdrleenfrelmnyd
ftaqmensldqvanheaewkavldhffsdftqqldkaekdpeeggmrpnqmvlts

Sequence, based on observed residues (ATOM records): (download)

>d1cy7a_ e.10.1.1 (A:) DNA topoisomerase I, 67K N-terminal domain {Escherichia coli [TaxId: 562]}
gkalvivespakaktinkylgsdyvvkssvghirdlptdergalvnrmgvdpwhnweahy
evlpgkekvvselkqlaekadhiylatdldregeaiawhlreviggddarysrvvfneit
knairqafnkpgelnidrvnaqqarrfmdrvvgymvspllwkkiarglsagrvqsvavrl
vverereikafvpeefwevdastttpsgealalqvthqndkpfrpvnkeqtqaavsllek
arysvleredkpttskpgapfitstlqqaastrlgfgvkktmmmaqrlyeagyitymrtd
stnlsqdavnmvrgyisdnfgkkylpespnqyensqeaheairpsdvnvmaeslkdmead
aqklyqliwrqfvacqmtpakydsttltvgagdfrlkargrilrfdgwtkvmpalilpav
nkgdaltlveltpaqhftkpparfseaslvkelekrgigrpstyasiistiqdrgyvrve
nrrfyaekmgeivtdrleenfrelmnydftaqmensldqvanheaewkavldhffsdftq
qldkaekdpeeggmrpnqmvlts

SCOPe Domain Coordinates for d1cy7a_:

Click to download the PDB-style file with coordinates for d1cy7a_.
(The format of our PDB-style files is described here.)

Timeline for d1cy7a_: