Lineage for d1qqca2 (1qqc A:348-756)

  1. Root: SCOP 1.67
  2. 423625Class e: Multi-domain proteins (alpha and beta) [56572] (40 folds)
  3. 424451Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 424452Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 424453Family e.8.1.1: DNA polymerase I [56673] (3 proteins)
  6. 424510Protein Family B DNA polymerase [56680] (6 species)
  7. 424511Species Archaeon Desulfurococcus tok [TaxId:108142] [56684] (2 PDB entries)
  8. 424513Domain d1qqca2: 1qqc A:348-756 [43013]
    Other proteins in same PDB: d1qqca1
    complexed with mg, so4

Details for d1qqca2

PDB Entry: 1qqc (more details), 2.6 Å

PDB Description: crystal structure of an archaebacterial dna polymerase d.tok

SCOP Domain Sequences for d1qqca2:

Sequence, based on SEQRES records: (download)

>d1qqca2 e.8.1.1 (A:348-756) Family B DNA polymerase {Archaeon Desulfurococcus tok}
stgnlvewfllrkayerndvapnkpderelarrtesyaggyvkepekglwenivyldyks
lypsiiithnvspdtlnregcreydvapqvghrfckdfpgfipsllgdlleerqkvkkkm
katvdpierklldyrqraikilansyygyyayanarwycrecaesvtawgrqyiettmre
ieekfgfkvlyadtdgffatipgadaetvknkakeflnyinprlpglleleyegfyrrgf
fvtkkkyavideedkittrgleivrrdwseiaketqarvleailkhgdveeavrivkevt
eklsrhevppeklviyeqitrdlrsyratgphvavakrlaargikirpgtvisyivlkgp
grvgdraipfdefdpakhrydaeyyienqvlpaverilrafgyrkedlr

Sequence, based on observed residues (ATOM records): (download)

>d1qqca2 e.8.1.1 (A:348-756) Family B DNA polymerase {Archaeon Desulfurococcus tok}
stgnlvewfllrkayerndvapnkpderelarrtesyakepekglwenivyldykslyps
iiithnvspdtlnregcreydvapqvghrfckdfpgfipsllgdlleerqkvkkkmkatv
dpierklldyrqraikilansyygyyayanarwycrecaesvtawgrqyiettmreieek
fgfkvlyadtdgffatipgadaetvknkakeflnyinprlpglleleyegfyrrgffvtk
kkyavideedkittrgleivrrdwseiaketqarvleailkhgdveeavrivkevtekls
rhevppeklviyegphvavakrlaargikirpgtvisyivlkgpgrvgdraipfdefdpa
khrydaeyyienqvlpaverilrafgyrkedlr

SCOP Domain Coordinates for d1qqca2:

Click to download the PDB-style file with coordinates for d1qqca2.
(The format of our PDB-style files is described here.)

Timeline for d1qqca2:

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Domains from same chain:
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d1qqca1