SCOP 1.65: Domain d3bdpa2: 3bdp A:469-876

Lineage for d3bdpa2 (3bdp A:469-876)

1. Root: SCOP 1.65

2. Class e: Multi-domain proteins (alpha and beta) [56572] (38 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (6 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.1: DNA polymerase I [56673] (3 proteins)

6. Protein DNA polymerase I (Klenow fragment) [56674] (3 species)

7. Species Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId:1422] [56677] (10 PDB entries)

8. Domain d3bdpa2: 3bdp A:469-876 [43004]
   Other proteins in same PDB: d3bdpa1
   protein/DNA complex; complexed with 2dt, so4

Details for d3bdpa2

PDB Entry: 3bdp, 1.9 Å

PDB Description: dna polymerase i/dna complex

SCOP Domain Sequences for d3bdpa2:

Sequence; same for both SEQRES and ATOM records:

>d3bdpa2 e.8.1.1 (A:469-876) DNA polymerase I (Klenow fragment) {Bacillus stearothermophilus, newly identified strain as yet unnamed}
eqdrllveleqplssilaemefagvkvdtkrleqmgkelaeqlgtveqriyelagqefni
nspkqlgvilfeklqlpvlkktktgystsadvleklapyheivenilhyrqlgklqstyi
egllkvvrpdtkkvhtifnqaltqtgrlsstepnlqnipirleegrkirqafvpsesdwl
ifaadysqielrvlahiaeddnlmeafrrdldihtktamdifqvsedevtpnmrrqakav
nfgivygisdyglaqnlnisrkeaaefieryfesfpgvkrymenivqeakqkgyvttllh
rrrylpditsrnfnvrsfaermamntpiqgsaadiikkamidlnarlkeerlqahlllqv
hdelileapkeemerlcrlvpevmeqavtlrvplkvdyhygstwydak

Timeline for d3bdpa2:

• d3bdpa2 first appeared (with stable ids) in SCOP 1.55
  
• d3bdpa2 appears in SCOP 1.63
  
• d3bdpa2 appears in SCOP 1.67
  
• d3bdpa2 appears in the current release, SCOPe 2.08