SCOP 1.63: Domain d9gafa_: 9gaf A:

Lineage for d9gafa_ (9gaf A:)

1. Root: SCOP 1.63

2. Class d: Alpha and beta proteins (a+b) [53931] (224 folds)

3. Fold d.153: Ntn hydrolase-like [56234] (2 superfamilies)
   4 layers: alpha/beta/beta/alpha; has an unusual sheet-to-sheet packing

4. Superfamily d.153.1: N-terminal nucleophile aminohydrolases (Ntn hydrolases) [56235] (5 families)
   N-terminal residue provides two catalytic groups, nucleophile and proton donor

5. Family d.153.1.5: (Glycosyl)asparaginase [56261] (1 protein)

6. Protein Glycosylasparaginase (aspartylglucosaminidase, AGA) [56262] (2 species)
   the precursor chain is cleaved onto 2 fragments by autoproteolysis

7. Species Flavobacterium meningosepticum [TaxId:238] [56264] (6 PDB entries)

8. Domain d9gafa_: 9gaf A: [42008]

Details for d9gafa_

PDB Entry: 9gaf, 1.9 Å

PDB Description: precursor of the w11f mutant glycosylasparaginase from flavobacterium meningosepticum

SCOP Domain Sequences for d9gafa_:

Sequence, based on SEQRES records:

>d9gafa_ d.153.1.5 (A:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Flavobacterium meningosepticum}
tnkpivlstfnfglhanveawkvlskggkaldavekgvrlveddptersvgyggrpdrdg
rvtldacimdenynigsvacmehiknpisvaravmektphvmlvgdgalefalsqgfkke
nlltaesekewkewlktsqykpivnienhdtigmialdaqgnlsgacttsgmaykmhgrv
gdspiigaglfvdneigaatatghgeevirtvgthlvvelmnqgrtpqqackeaverivk
ivnrrgknlkdiqvgfialnkkgeygayciqdgfnfavhdqkgnrletpgfalk

Sequence, based on observed residues (ATOM records):

>d9gafa_ d.153.1.5 (A:) Glycosylasparaginase (aspartylglucosaminidase, AGA) {Flavobacterium meningosepticum}
tnkpivlstfnfglhanveawkvlskggkaldavekgvrlveddptersvgyggrpdrdg
rvtldacimdenynigsvacmehiknpisvaravmektphvmlvgdgalefalsqgfkke
nlltaesekewkewlykpivnienhdtigmialdaqgnlsgacttsgmaykmhgrvgdsp
iigaglfvdneigaatatghgeevirtvgthlvvelmnqgrtpqqackeaverivkivnr
rgknlkdiqvgfialnkkgeygayciqdgfnfavhdqkgnrletpgfalk

Timeline for d9gafa_:

• d9gafa_ first appeared (with stable ids) in SCOP 1.55
  
• d9gafa_ appears in SCOP 1.61
  
• d9gafa_ appears in SCOP 1.65
  
• d9gafa_ appears in the current release, SCOPe 2.08