Lineage for Species: Xanthobacter sp., py2 [TaxId: 35809]

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2849308Fold c.3: FAD/NAD(P)-binding domain [51904] (1 superfamily)
    core: 3 layers, b/b/a; central parallel beta-sheet of 5 strands, order 32145; top antiparallel beta-sheet of 3 strands, meander
  4. 2849309Superfamily c.3.1: FAD/NAD(P)-binding domain [51905] (9 families) (S)
  5. 2849878Family c.3.1.5: FAD/NAD-linked reductases, N-terminal and central domains [51943] (25 proteins)
    duplication: both domains have similar folds and functions
    most members of the family contain common C-terminal alpha+beta domain
  6. 2850095Protein NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase, middle domain [418949] (1 species)
  7. 2850096Species Xanthobacter sp., py2 [TaxId:35809] [419405] (5 PDB entries)

PDB entries in Species: Xanthobacter sp., py2 [TaxId: 35809]:

  1. Domain(s) for 1mo9:
    1. 2850097Domain d1mo9a2: 1mo9 A:193-313 [79342]
      Other proteins in same PDB: d1mo9a1, d1mo9a3, d1mo9b1, d1mo9b3
      complexed with fad, kpc
    2. 2850098Domain d1mo9b2: 1mo9 B:193-313 [79345]
      Other proteins in same PDB: d1mo9a1, d1mo9a3, d1mo9b1, d1mo9b3
      complexed with fad, kpc
  2. Domain(s) for 1mok:
    1. 2850105Domain d1moka2: 1mok A:193-313 [79348]
      Other proteins in same PDB: d1moka1, d1moka3, d1mokb1, d1mokb3, d1mokc1, d1mokc3, d1mokd1, d1mokd3
      complexed with fad
    2. 2850106Domain d1mokb2: 1mok B:193-313 [79351]
      Other proteins in same PDB: d1moka1, d1moka3, d1mokb1, d1mokb3, d1mokc1, d1mokc3, d1mokd1, d1mokd3
      complexed with fad
    3. 2850107Domain d1mokc2: 1mok C:193-313 [79354]
      Other proteins in same PDB: d1moka1, d1moka3, d1mokb1, d1mokb3, d1mokc1, d1mokc3, d1mokd1, d1mokd3
      complexed with fad
    4. 2850108Domain d1mokd2: 1mok D:193-313 [79357]
      Other proteins in same PDB: d1moka1, d1moka3, d1mokb1, d1mokb3, d1mokc1, d1mokc3, d1mokd1, d1mokd3
      complexed with fad
  3. Domain(s) for 2c3c:
    1. 2850101Domain d2c3ca2: 2c3c A:193-313 [129726]
      Other proteins in same PDB: d2c3ca1, d2c3ca3, d2c3cb1, d2c3cb3
      automated match to d1mo9a2
      complexed with acn, com, fad, nap
    2. 2850102Domain d2c3cb2: 2c3c B:193-313 [129729]
      Other proteins in same PDB: d2c3ca1, d2c3ca3, d2c3cb1, d2c3cb3
      automated match to d1mo9a2
      complexed with acn, com, fad, nap
  4. Domain(s) for 2c3d:
    1. 2850103Domain d2c3da2: 2c3d A:193-313 [129732]
      Other proteins in same PDB: d2c3da1, d2c3da3, d2c3db1, d2c3db3
      automated match to d1mo9a2
      complexed with com, fad
    2. 2850104Domain d2c3db2: 2c3d B:193-313 [129735]
      Other proteins in same PDB: d2c3da1, d2c3da3, d2c3db1, d2c3db3
      automated match to d1mo9a2
      complexed with com, fad
  5. Domain(s) for 3q6j:
    1. 2850099Domain d3q6ja2: 3q6j A:193-313 [215083]
      Other proteins in same PDB: d3q6ja1, d3q6ja3, d3q6jb1, d3q6jb3
      automated match to d1mo9a2
      complexed with acn, bct, co2, com, fad, kpc, mg, nap
    2. 2850100Domain d3q6jb2: 3q6j B:193-313 [215086]
      Other proteins in same PDB: d3q6ja1, d3q6ja3, d3q6jb1, d3q6jb3
      automated match to d1mo9a2
      complexed with acn, bct, co2, com, fad, kpc, mg, nap

More info for Species Xanthobacter sp., py2 [TaxId:35809] from c.3.1.5 NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase, middle domain

Timeline for Species Xanthobacter sp., py2 [TaxId:35809] from c.3.1.5 NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase, middle domain:

  • Species Xanthobacter sp., py2 [TaxId:35809] from c.3.1.5 NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase, middle domain is new in SCOPe 2.08-stable