Lineage for Species: Human adenovirus type 5 [TaxId: 28285]

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
    sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
    characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies
  4. Superfamily b.121.2: Group II dsDNA viruses VP [49749] (4 families) (S)
    duplication: consists of two domains of this fold packed together like the nucleoplasmin subunits
    trimeric; in the trimers, the domains are arranged around pseudo six-fold axis
  5. Family b.121.2.2: Adenovirus hexon [49753] (3 proteins)
    each domain is heavily decorated with many insertions
  6. Protein Adenovirus hexon, N-terminal domain [418930] (2 species)
  7. Species Human adenovirus type 5 [TaxId:28285] [419364] (3 PDB entries)

PDB entries in Species: Human adenovirus type 5 [TaxId: 28285]:

  1. Domain(s) for 1p30:
  2. Domain(s) for 2bvi:
    1. Domain d2bvif1: 2bvi F:5-636 [129258]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    2. Domain d2bvig1: 2bvi G:5-636 [129260]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    3. Domain d2bvih1: 2bvi H:5-636 [129262]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    4. Domain d2bvii1: 2bvi I:5-636 [129264]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    5. Domain d2bvij1: 2bvi J:5-636 [129266]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    6. Domain d2bvik1: 2bvi K:5-636 [129268]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    7. Domain d2bvil1: 2bvi L:5-636 [129270]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    8. Domain d2bvim1: 2bvi M:5-636 [129272]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    9. Domain d2bvin1: 2bvi N:5-636 [129274]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    10. Domain d2bvio1: 2bvi O:5-636 [129276]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    11. Domain d2bvip1: 2bvi P:5-636 [129278]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
    12. Domain d2bviq1: 2bvi Q:5-636 [129280]
      Other proteins in same PDB: d2bvif2, d2bvig2, d2bvih2, d2bvii2, d2bvij2, d2bvik2, d2bvil2, d2bvim2, d2bvin2, d2bvio2, d2bvip2, d2bviq2
      has additional subdomain(s) that are not in the common domain
  3. Domain(s) for 3tg7:

More info for Species Human adenovirus type 5 [TaxId:28285] from b.121.2.2 Adenovirus hexon, N-terminal domain

Timeline for Species Human adenovirus type 5 [TaxId:28285] from b.121.2.2 Adenovirus hexon, N-terminal domain:

  • Species Human adenovirus type 5 [TaxId:28285] from b.121.2.2 Adenovirus hexon, N-terminal domain is new in SCOPe 2.08-stable