Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2782725Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2784517Superfamily b.34.9: Tudor/PWWP/MBT [63748] (5 families) (S)
  5. 2784518Family b.34.9.1: Tudor domain [63749] (9 proteins)
    Pfam PF00567
  6. 2784552Protein p53-binding protein 1, 53BP1, C-terminal domain [418915] (1 species)
    protein duplication: contains two Tudor domains in tandem
  7. 2784553Species Human (Homo sapiens) [TaxId:9606] [419339] (18 PDB entries)
    Uniprot Q12888 1485-1602 ! Uniprot Q12888 1484-1606

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1ssf:
    • 2784605Domain d1ssfa2: 1ssf A:61-129 [105983]
      Other proteins in same PDB: d1ssfa1
      has additional insertions and/or extensions that are not grouped together
  2. Domain(s) for 1xni:
    1. 2784581Domain d1xnia2: 1xni A:1538-1602 [115583]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    2. 2784582Domain d1xnib2: 1xni B:1538-1602 [115585]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    3. 2784583Domain d1xnic2: 1xni C:1538-1602 [115587]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    4. 2784584Domain d1xnid2: 1xni D:1538-1602 [115589]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    5. 2784585Domain d1xnie2: 1xni E:1538-1602 [115591]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    6. 2784586Domain d1xnif2: 1xni F:1538-1602 [115593]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    7. 2784587Domain d1xnig2: 1xni G:1538-1602 [115595]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    8. 2784588Domain d1xnih2: 1xni H:1538-1602 [115597]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    9. 2784589Domain d1xnii2: 1xni I:1538-1602 [115599]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
    10. 2784590Domain d1xnij2: 1xni J:1538-1602 [115601]
      Other proteins in same PDB: d1xnia1, d1xnib1, d1xnic1, d1xnid1, d1xnie1, d1xnif1, d1xnig1, d1xnih1, d1xnii1, d1xnij1
      has additional insertions and/or extensions that are not grouped together
  3. Domain(s) for 2g3r:
    • 2784554Domain d2g3ra2: 2g3r A:1538-1603 [134571]
      Other proteins in same PDB: d2g3ra1
      automated match to d1ssfa2
      complexed with so4

      has additional insertions and/or extensions that are not grouped together
  4. Domain(s) for 2ig0:
    • 2784558Domain d2ig0a2: 2ig0 A:1538-1603 [137351]
      Other proteins in same PDB: d2ig0a1
      automated match to d1ssfa2
      protein/DNA complex; complexed with so4

      has additional insertions and/or extensions that are not grouped together
  5. Domain(s) for 2lvm:
  6. Domain(s) for 4rg2:
    1. 2784559Domain d4rg2a2: 4rg2 A:1538-1603 [260429]
      Other proteins in same PDB: d4rg2a1, d4rg2b1, d4rg2b3
      automated match to d1ssfa2
      complexed with 3oo, edo, unx

      has additional insertions and/or extensions that are not grouped together
    2. 2784560Domain d4rg2b2: 4rg2 B:1538-1602 [263864]
      Other proteins in same PDB: d4rg2a1, d4rg2b1, d4rg2b3
      automated match to d1ssfa2
      complexed with 3oo, edo, unx

      has additional insertions and/or extensions that are not grouped together
  7. Domain(s) for 5j26:
  8. Domain(s) for 5z78:
  9. Domain(s) for 5zcj:
  10. Domain(s) for 6co1:
    1. 2784567Domain d6co1e2: 6co1 E:1538-1603 [353225]
      Other proteins in same PDB: d6co1a_, d6co1b_, d6co1c_, d6co1d_, d6co1e1, d6co1f1
      automated match to d1ssfa2
      protein/DNA complex
    2. 2784568Domain d6co1f2: 6co1 F:1538-1603 [353234]
      Other proteins in same PDB: d6co1a_, d6co1b_, d6co1c_, d6co1d_, d6co1e1, d6co1f1
      automated match to d1ssfa2
      protein/DNA complex
  11. Domain(s) for 6co2:
    1. 2784601Domain d6co2c2: 6co2 C:1538-1602 [353194]
      Other proteins in same PDB: d6co2c1, d6co2d1
      automated match to d1ssfa2
      protein/RNA complex
    2. 2784602Domain d6co2d2: 6co2 D:1538-1603 [353199]
      Other proteins in same PDB: d6co2c1, d6co2d1
      automated match to d1ssfa2
      protein/RNA complex
  12. Domain(s) for 6mxx:
    1. 2784571Domain d6mxxa2: 6mxx A:1538-1603 [377421]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    2. 2784572Domain d6mxxb2: 6mxx B:1538-1602 [377478]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    3. 2784573Domain d6mxxc2: 6mxx C:1538-1602 [377391]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    4. 2784574Domain d6mxxd2: 6mxx D:1538-1603 [377389]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    5. 2784575Domain d6mxxe2: 6mxx E:1538-1603 [377416]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    6. 2784576Domain d6mxxf2: 6mxx F:1538-1603 [377438]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    7. 2784577Domain d6mxxg2: 6mxx G:1538-1602 [377465]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    8. 2784578Domain d6mxxh2: 6mxx H:1538-1602 [377408]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    9. 2784579Domain d6mxxi2: 6mxx I:1538-1602 [377445]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
    10. 2784580Domain d6mxxj2: 6mxx J:1538-1602 [377400]
      Other proteins in same PDB: d6mxxa1, d6mxxb1, d6mxxc1, d6mxxc3, d6mxxd1, d6mxxe1, d6mxxf1, d6mxxg1, d6mxxh1, d6mxxi1, d6mxxj1, d6mxxj3
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6p, po4
  13. Domain(s) for 6mxy:
    1. 2784561Domain d6mxya2: 6mxy A:1538-1603 [377380]
      Other proteins in same PDB: d6mxya1, d6mxya3, d6mxyb1, d6mxyb3
      automated match to d1ssfa2
      protein/DNA complex; complexed with k6m, po4
    2. 2784562Domain d6mxyb2: 6mxy B:1538-1603 [377377]
      Other proteins in same PDB: d6mxya1, d6mxya3, d6mxyb1, d6mxyb3
      automated match to d1ssfa2
      protein/DNA complex; complexed with k6m, po4
  14. Domain(s) for 6mxz:
    1. 2784591Domain d6mxza2: 6mxz A:1538-1603 [377406]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    2. 2784592Domain d6mxzb2: 6mxz B:1538-1603 [377418]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    3. 2784593Domain d6mxzc2: 6mxz C:1538-1602 [377450]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    4. 2784594Domain d6mxzd2: 6mxz D:1538-1603 [377433]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    5. 2784595Domain d6mxze2: 6mxz E:1538-1602 [377410]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    6. 2784596Domain d6mxzf2: 6mxz F:1538-1603 [377469]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    7. 2784597Domain d6mxzg2: 6mxz G:1538-1603 [377403]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    8. 2784598Domain d6mxzh2: 6mxz H:1538-1602 [377394]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    9. 2784599Domain d6mxzi2: 6mxz I:1538-1603 [377423]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
    10. 2784600Domain d6mxzj2: 6mxz J:1538-1602 [377397]
      Other proteins in same PDB: d6mxza1, d6mxzb1, d6mxzc1, d6mxzd1, d6mxze1, d6mxze3, d6mxzf1, d6mxzg1, d6mxzg3, d6mxzh1, d6mxzi1, d6mxzj1
      automated match to d1ssfa2
      protein/DNA complex; complexed with fmt, k6s
  15. Domain(s) for 6my0:
    1. 2784569Domain d6my0a2: 6my0 A:1538-1603 [377373]
      Other proteins in same PDB: d6my0a1, d6my0a3, d6my0b1
      automated match to d1ssfa2
      mutant
    2. 2784570Domain d6my0b2: 6my0 B:1538-1602 [377371]
      Other proteins in same PDB: d6my0a1, d6my0a3, d6my0b1
      automated match to d1ssfa2
      mutant
  16. Domain(s) for 6upt:
    1. 2784564Domain d6upta2: 6upt A:1538-1603 [377195]
      Other proteins in same PDB: d6upta1, d6uptb1
      automated match to d1ssfa2
      complexed with qfm, unx
    2. 2784565Domain d6uptb2: 6upt B:1538-1605 [377200]
      Other proteins in same PDB: d6upta1, d6uptb1
      automated match to d1ssfa2
      complexed with qfm, unx
  17. Domain(s) for 6va5:
  18. Domain(s) for 6vip:
    1. 2784556Domain d6vipa2: 6vip A:1538-1604 [380598]
      Other proteins in same PDB: d6vipa1, d6vipb1
      automated match to d1ssfa2
      complexed with qxy, unx
    2. 2784557Domain d6vipb2: 6vip B:1538-1604 [380588]
      Other proteins in same PDB: d6vipa1, d6vipb1
      automated match to d1ssfa2
      complexed with qxy, unx

More info for Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, C-terminal domain

Timeline for Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, C-terminal domain:

  • Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, C-terminal domain is new in SCOPe 2.08-stable