Lineage for Species: Human (Homo sapiens) [TaxId: 9606]

  1. Root: SCOPe 2.08
  2. Class b: All beta proteins [48724] (180 folds)
  3. Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. Superfamily b.34.9: Tudor/PWWP/MBT [63748] (5 families) (S)
  5. Family b.34.9.1: Tudor domain [63749] (9 proteins)
    Pfam PF00567
  6. Protein p53-binding protein 1, 53BP1, N-terminal domain [418914] (1 species)
    protein duplication: contains two Tudor domains in tandem
  7. Species Human (Homo sapiens) [TaxId:9606] [419338] (18 PDB entries)
    Uniprot Q12888 1485-1602 ! Uniprot Q12888 1484-1606

PDB entries in Species: Human (Homo sapiens) [TaxId: 9606]:

  1. Domain(s) for 1ssf:
  2. Domain(s) for 1xni:
    1. Domain d1xnia1: 1xni A:1485-1537 [115582]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    2. Domain d1xnib1: 1xni B:1485-1537 [115584]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    3. Domain d1xnic1: 1xni C:1485-1537 [115586]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    4. Domain d1xnid1: 1xni D:1485-1537 [115588]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    5. Domain d1xnie1: 1xni E:1485-1537 [115590]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    6. Domain d1xnif1: 1xni F:1485-1537 [115592]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    7. Domain d1xnig1: 1xni G:1485-1537 [115594]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    8. Domain d1xnih1: 1xni H:1485-1537 [115596]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    9. Domain d1xnii1: 1xni I:1485-1537 [115598]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
    10. Domain d1xnij1: 1xni J:1485-1537 [115600]
      Other proteins in same PDB: d1xnia2, d1xnib2, d1xnic2, d1xnid2, d1xnie2, d1xnif2, d1xnig2, d1xnih2, d1xnii2, d1xnij2
  3. Domain(s) for 2g3r:
  4. Domain(s) for 2ig0:
  5. Domain(s) for 2lvm:
  6. Domain(s) for 4rg2:
    1. Domain d4rg2a1: 4rg2 A:1485-1537 [260428]
      Other proteins in same PDB: d4rg2a2, d4rg2b2, d4rg2b3
      automated match to d1ssfa1
      complexed with 3oo, edo, unx
    2. Domain d4rg2b1: 4rg2 B:1483-1537 [263863]
      Other proteins in same PDB: d4rg2a2, d4rg2b2, d4rg2b3
      automated match to d1ssfa1
      complexed with 3oo, edo, unx
  7. Domain(s) for 5j26:
  8. Domain(s) for 5z78:
  9. Domain(s) for 5zcj:
  10. Domain(s) for 6co1:
    1. Domain d6co1e1: 6co1 E:1484-1537 [353224]
      Other proteins in same PDB: d6co1a_, d6co1b_, d6co1c_, d6co1d_, d6co1e2, d6co1f2
      automated match to d2lvma1
      protein/DNA complex
    2. Domain d6co1f1: 6co1 F:1485-1537 [353233]
      Other proteins in same PDB: d6co1a_, d6co1b_, d6co1c_, d6co1d_, d6co1e2, d6co1f2
      automated match to d2lvma1
      protein/DNA complex
  11. Domain(s) for 6co2:
    1. Domain d6co2c1: 6co2 C:1485-1537 [353193]
      Other proteins in same PDB: d6co2c2, d6co2d2
      automated match to d2lvma1
      protein/RNA complex
    2. Domain d6co2d1: 6co2 D:1486-1537 [353198]
      Other proteins in same PDB: d6co2c2, d6co2d2
      automated match to d2lvma1
      protein/RNA complex
  12. Domain(s) for 6mxx:
    1. Domain d6mxxa1: 6mxx A:1484-1537 [377420]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    2. Domain d6mxxb1: 6mxx B:1484-1537 [377477]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    3. Domain d6mxxc1: 6mxx C:1484-1537 [377390]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    4. Domain d6mxxd1: 6mxx D:1484-1537 [377388]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    5. Domain d6mxxe1: 6mxx E:1484-1537 [377415]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    6. Domain d6mxxf1: 6mxx F:1484-1537 [377437]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    7. Domain d6mxxg1: 6mxx G:1484-1537 [377464]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    8. Domain d6mxxh1: 6mxx H:1484-1537 [377407]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    9. Domain d6mxxi1: 6mxx I:1485-1537 [377444]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
    10. Domain d6mxxj1: 6mxx J:1484-1537 [377399]
      Other proteins in same PDB: d6mxxa2, d6mxxb2, d6mxxc2, d6mxxc3, d6mxxd2, d6mxxe2, d6mxxf2, d6mxxg2, d6mxxh2, d6mxxi2, d6mxxj2, d6mxxj3
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6p, po4
  13. Domain(s) for 6mxy:
    1. Domain d6mxya1: 6mxy A:1484-1537 [377379]
      Other proteins in same PDB: d6mxya2, d6mxya3, d6mxyb2, d6mxyb3
      automated match to d2lvma1
      protein/DNA complex; complexed with k6m, po4
    2. Domain d6mxyb1: 6mxy B:1484-1537 [377376]
      Other proteins in same PDB: d6mxya2, d6mxya3, d6mxyb2, d6mxyb3
      automated match to d2lvma1
      protein/DNA complex; complexed with k6m, po4
  14. Domain(s) for 6mxz:
    1. Domain d6mxza1: 6mxz A:1485-1537 [377405]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    2. Domain d6mxzb1: 6mxz B:1484-1537 [377417]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    3. Domain d6mxzc1: 6mxz C:1484-1537 [377449]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    4. Domain d6mxzd1: 6mxz D:1484-1537 [377432]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    5. Domain d6mxze1: 6mxz E:1484-1537 [377409]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    6. Domain d6mxzf1: 6mxz F:1485-1537 [377468]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    7. Domain d6mxzg1: 6mxz G:1484-1537 [377402]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    8. Domain d6mxzh1: 6mxz H:1484-1537 [377393]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    9. Domain d6mxzi1: 6mxz I:1484-1537 [377422]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
    10. Domain d6mxzj1: 6mxz J:1485-1537 [377396]
      Other proteins in same PDB: d6mxza2, d6mxzb2, d6mxzc2, d6mxzd2, d6mxze2, d6mxze3, d6mxzf2, d6mxzg2, d6mxzg3, d6mxzh2, d6mxzi2, d6mxzj2
      automated match to d2lvma1
      protein/DNA complex; complexed with fmt, k6s
  15. Domain(s) for 6my0:
    1. Domain d6my0a1: 6my0 A:1484-1537 [377372]
      Other proteins in same PDB: d6my0a2, d6my0a3, d6my0b2
      automated match to d2lvma1
      mutant
    2. Domain d6my0b1: 6my0 B:1485-1537 [377370]
      Other proteins in same PDB: d6my0a2, d6my0a3, d6my0b2
      automated match to d2lvma1
      mutant
  16. Domain(s) for 6upt:
    1. Domain d6upta1: 6upt A:1485-1537 [377194]
      Other proteins in same PDB: d6upta2, d6uptb2
      automated match to d2lvma1
      complexed with qfm, unx
    2. Domain d6uptb1: 6upt B:1486-1537 [377199]
      Other proteins in same PDB: d6upta2, d6uptb2
      automated match to d2lvma1
      complexed with qfm, unx
  17. Domain(s) for 6va5:
  18. Domain(s) for 6vip:
    1. Domain d6vipa1: 6vip A:1485-1537 [380597]
      Other proteins in same PDB: d6vipa2, d6vipb2
      automated match to d2lvma1
      complexed with qxy, unx
    2. Domain d6vipb1: 6vip B:1484-1537 [380587]
      Other proteins in same PDB: d6vipa2, d6vipb2
      automated match to d2lvma1
      complexed with qxy, unx

More info for Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, N-terminal domain

Timeline for Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, N-terminal domain:

  • Species Human (Homo sapiens) [TaxId:9606] from b.34.9.1 p53-binding protein 1, 53BP1, N-terminal domain is new in SCOPe 2.08-stable