SCOPe 2.08: Domain d7cj2a1: 7cj2 A:1-239,A:308-361

Lineage for d7cj2a1 (7cj2 A:1-239,A:308-361)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.5: Type II chitinase [51534] (15 proteins)
   glycosylase family 18

6. Protein Chitinase-3 like protein 1 (GP-39, YKL-40) [89482] (1 species)

7. Species Human (Homo sapiens) [TaxId:9606] [89483] (8 PDB entries)

8. Domain d7cj2a1: 7cj2 A:1-239,A:308-361 [417784]
   Other proteins in same PDB: d7cj2a2, d7cj2b2, d7cj2c_, d7cj2d_, d7cj2k_, d7cj2l_
   automated match to d1hjva1
   complexed with bma, nag

Details for d7cj2a1

PDB Entry: 7cj2, 2.7 Å

PDB Description: crystal structure of the fab antibody complexed with human ykl-40

PDB Compounds: (A:) Chitinase 3-like 1 (Cartilage glycoprotein-39), isoform CRA_a

SCOPe Domain Sequences for d7cj2a1:

Sequence; same for both SEQRES and ATOM records:

>d7cj2a1 c.1.8.5 (A:1-239,A:308-361) Chitinase-3 like protein 1 (GP-39, YKL-40) {Human (Homo sapiens) [TaxId: 9606]}
yklvcyytswsqyregdgscfpdaldrflcthiiysfanisndhidtwewndvtlygmln
tlknrnpnlktllsvggwnfgsqrfskiasntqsrrtfiksvppflrthgfdgldlawly
pgrrdkqhfttlikemkaefikeaqpgkkqlllsaalsagkvtidssydiakisqhldfi
simtydfhgawrgttghhsplfrgqedaspdrfsntdyavgymlrlgapasklvmgiptX
ddqesvkskvqylkdrqlagamvwaldlddfqgsfcgqdlrfpltnaikdalaa

Timeline for d7cj2a1:

• d7cj2a1 is new in SCOPe 2.08-stable