SCOPe 2.08: Domain d6jama1: 6jam A:1-402

Lineage for d6jama1 (6jam A:1-402)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.94: Periplasmic binding protein-like II [53849] (1 superfamily)
   consists of two similar intertwined domain with 3 layers (a/b/a) each: duplication
   mixed beta-sheet of 5 strands, order 21354; strand 5 is antiparallel to the rest

4. Superfamily c.94.1: Periplasmic binding protein-like II [53850] (4 families)
   Similar in architecture to the superfamily I but partly differs in topology

5. Family c.94.1.0: automated matches [191309] (1 protein)
   not a true family

6. Protein automated matches [190039] (161 species)
   not a true protein

7. Species Thermus thermophilus [TaxId:300852] [420023] (34 PDB entries)

8. Domain d6jama1: 6jam A:1-402 [416218]
   Other proteins in same PDB: d6jama2
   automated match to d6dtqa_
   complexed with act, cit, edo, glc, peg; mutant

Details for d6jama1

PDB Entry: 6jam, 1.63 Å

PDB Description: crystal structure of abc transporter alpha-glycoside-binding mutant protein r356a in complex with trehalose

PDB Compounds: (A:) ABC transporter, periplasmic substrate-binding protein

SCOPe Domain Sequences for d6jama1:

Sequence; same for both SEQRES and ATOM records:

>d6jama1 c.94.1.0 (A:1-402) automated matches {Thermus thermophilus [TaxId: 300852]}
qsgpvirvagdstavgeggrwmkemveawgkktgtrveyidspadtndrlalyqqywaar
spdvdvymidviwpgivaphaldlkpylteaelkeffprivqnntirgkltslpfftdag
ilyyrkdllekygytspprtwneleqmaervmegerragnrdfwgfvfqgkpyegltcda
lewiyshgggrivepdgtisvnngraalalnrahgwvgriapqgvtsyaeeearnvwqqg
nslfmrnwpyayalgqaegspirgkfgvtvlpkasadapnaatlggwqlmvsaysrypke
avdlvkylasyevqkdnavrlsrlptrpalytdrdvlarnpwfrdllpvfqnavsapsdv
agarynqvseaiwtevhsvltgrkkgeqavrdlearirrilr

Timeline for d6jama1:

• d6jama1 is new in SCOPe 2.08-stable