SCOPe 2.05: Domain d1b04b_: 1b04 B:

Lineage for d1b04b_ (1b04 B:)

1. Root: SCOPe 2.05

2. Class d: Alpha and beta proteins (a+b) [53931] (381 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families)
   has a circularly permuted topology

5. Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins)
   automatically mapped to Pfam PF01653

6. Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species)
   contains additional, N-terminal all-alpha subdomain

7. Species Bacillus stearothermophilus [TaxId:1422] [56098] (1 PDB entry)

8. Domain d1b04b_: 1b04 B: [41580]

Details for d1b04b_

PDB Entry: 1b04, 2.8 Å

PDB Description: structure of the adenylation domain of an nad+ dependent ligase

PDB Compounds: (B:) protein (DNA ligase)

SCOPe Domain Sequences for d1b04b_:

Sequence, based on SEQRES records:

>d1b04b_ d.142.2.2 (B:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
mdrqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdsp
tqriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglav
svryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrl
neerkargeelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdy
lqalgfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgatak
sprwaiaykfpae

Sequence, based on observed residues (ATOM records):

>d1b04b_ d.142.2.2 (B:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
mdrqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdsp
tqriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglav
svryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrl
neerkarelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdylq
algfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgataksp
rwaiaykfpae

Timeline for d1b04b_:

• d1b04b_ first appeared (with stable ids) in SCOP 1.55
  
• d1b04b_ appears in SCOPe 2.04
  
• d1b04b_ appears in SCOPe 2.06
  
• d1b04b_ appears in the current release, SCOPe 2.08