Lineage for d1b04a_ (1b04 A:)

  1. Root: SCOPe 2.06
  2. 2170735Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2217268Fold d.142: ATP-grasp [56058] (2 superfamilies)
    Consists of two subdomains with different alpha+beta folds
    shares functional and structural similarities with the PIPK and protein kinase superfamilies
  4. 2217840Superfamily d.142.2: DNA ligase/mRNA capping enzyme, catalytic domain [56091] (6 families) (S)
    has a circularly permuted topology
  5. 2217856Family d.142.2.2: Adenylation domain of NAD+-dependent DNA ligase [56096] (2 proteins)
    automatically mapped to Pfam PF01653
  6. 2217857Protein Adenylation domain of NAD+-dependent DNA ligase [56097] (4 species)
    contains additional, N-terminal all-alpha subdomain
  7. 2217858Species Bacillus stearothermophilus [TaxId:1422] [56098] (1 PDB entry)
  8. 2217859Domain d1b04a_: 1b04 A: [41579]

Details for d1b04a_

PDB Entry: 1b04 (more details), 2.8 Å

PDB Description: structure of the adenylation domain of an nad+ dependent ligase
PDB Compounds: (A:) protein (DNA ligase)

SCOPe Domain Sequences for d1b04a_:

Sequence, based on SEQRES records: (download)

>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
drqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdspt
qriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglavs
vryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrln
eerkargeelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdyl
qalgfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgataks
prwaiaykfpae

Sequence, based on observed residues (ATOM records): (download)

>d1b04a_ d.142.2.2 (A:) Adenylation domain of NAD+-dependent DNA ligase {Bacillus stearothermophilus [TaxId: 1422]}
drqqaerraaelrellnrygyeyyvldrpsvpdaeydrlmqeliaieeqypelktsdspt
qriggppleafrkvahrvpmmslanafgegdlrdfdrrvrqevgeaayvcelaidglavs
vryedgyfvqgatrgdgttgeditenlktirslplrlkepvsleargeafmpkasflrln
eerkarelfanprnaaagslrqldpkvaasrqldlfvygladaealgiashsealdylqa
lgfkvnperrrcanideviafvsewhdkrpqlpyeidgivikvdsfaqqralgatakspr
waiaykfpae

SCOPe Domain Coordinates for d1b04a_:

Click to download the PDB-style file with coordinates for d1b04a_.
(The format of our PDB-style files is described here.)

Timeline for d1b04a_:

View in 3D
Domains from other chains:
(mouse over for more information)
d1b04b_