SCOPe 2.08: Domain d5j35b1: 5j35 B:225-530

Lineage for d5j35b1 (5j35 B:225-530)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Norovirus hu/gii.4/sydney/nsw0514/2012/au [TaxId:1241973] [419916] (10 PDB entries)

8. Domain d5j35b1: 5j35 B:225-530 [414937]
   Other proteins in same PDB: d5j35a2, d5j35b2
   automated match to d5or7a_
   complexed with edo

Details for d5j35b1

PDB Entry: 5j35, 1.47 Å

PDB Description: protruding domain of gii.4 human norovirus nsw0514 in complex with 2- fucosyllactose (2'fl)

PDB Compounds: (B:) vp1

SCOPe Domain Sequences for d5j35b1:

Sequence; same for both SEQRES and ATOM records:

>d5j35b1 b.121.4.0 (B:225-530) automated matches {Norovirus hu/gii.4/sydney/nsw0514/2012/au [TaxId: 1241973]}
kpfsvpvltveemtnsrfpipleklftgpssafvvqpqngrcttdgvllgttqlspvnic
tfrgdvthitgsrnytmnlasqnwndydpteeipaplgtpdfvgkiqgvltqttrtdgst
rghkatvytgsadfapklgrvqfetdtdrdfeanqntkftpvgviqdggtthrnepqqwv
lpsysgrnthnvhlapavaptfpgeqllffrstmpgcsgypnmdldcllpqewvqyfyqe
aapaqsdvallrfvnpdtgrvlfecklhksgyvtvahtgqhdlvippngyfrfdswvnqf
ytlapm

Timeline for d5j35b1:

• d5j35b1 is new in SCOPe 2.08-stable