SCOPe 2.04: Domain d2dlna2: 2dln A:97-306

Lineage for d2dlna2 (2dln A:97-306)

1. Root: SCOPe 2.04

2. Class d: Alpha and beta proteins (a+b) [53931] (380 folds)

3. Fold d.142: ATP-grasp [56058] (2 superfamilies)
   Consists of two subdomains with different alpha+beta folds
   shares functional and structural similarities with the PIPK and protein kinase superfamilies

4. Superfamily d.142.1: Glutathione synthetase ATP-binding domain-like [56059] (10 families)

5. Family d.142.1.1: ATP-binding domain of peptide synthetases [56060] (3 proteins)

6. Protein D-ala-D-ala ligase, C-domain [56063] (1 species)

7. Species Escherichia coli, gene ddlB [TaxId:562] [56064] (3 PDB entries)

8. Domain d2dlna2: 2dln A:97-306 [41483]
   Other proteins in same PDB: d2dlna1
   complexed with adp, mg, phy

Details for d2dlna2

PDB Entry: 2dln, 2.3 Å

PDB Description: vancomycin resistance: structure of d-alanine:d-alanine ligase at 2.3 angstroms resolution

PDB Compounds: (A:) d-alanine--d-alanine ligase

SCOPe Domain Sequences for d2dlna2:

Sequence; same for both SEQRES and ATOM records:

>d2dlna2 d.142.1.1 (A:97-306) D-ala-D-ala ligase, C-domain {Escherichia coli, gene ddlB [TaxId: 562]}
klrskllwqgaglpvapwvaltraefekglsdkqlaeisalglpvivkpsregssvgmsk
vvaenalqdalrlafqhdeevliekwlsgpeftvailgeeilpsiriqpsgtfydyeaky
lsdetqyfcpagleasqeanlqalvlkawttlgckgwgridvmldsdgqfylleantspg
mtshslvpmaarqagmsfsqlvvrilelad

Timeline for d2dlna2:

• d2dlna2 first appeared (with stable ids) in SCOP 1.55, called d2dln_2
  
• d2dlna2 appears in SCOPe 2.03
  
• d2dlna2 appears in SCOPe 2.05
  
• d2dlna2 appears in the current release, SCOPe 2.08