SCOPe 2.08: Domain d4xtoc_: 4xto C:

Lineage for d4xtoc_ (4xto C:)

1. Root: SCOPe 2.08

2. Class f: Membrane and cell surface proteins and peptides [56835] (69 folds)

3. Fold f.13: Class A G protein-coupled receptor (GPCR)-like [81322] (1 superfamily)
   core: up-and-down bundle of seven transmembrane helices tilted 20 degrees with respect to the plane of the membrane

4. Superfamily f.13.1: Class A G protein-coupled receptor (GPCR)-like [81321] (5 families)
   Pfam PF13853. Phylogeny described in PubMed 12761335

5. Family f.13.1.0: automated matches [227143] (1 protein)
   not a true family

6. Protein automated matches [226845] (25 species)
   not a true protein

7. Species Dokdonia eikasta [TaxId:308116] [368258] (36 PDB entries)

8. Domain d4xtoc_: 4xto C: [414494]
   automated match to d6rf7a_
   complexed with lfa, na

Details for d4xtoc_

PDB Entry: 4xto, 2.8 Å

PDB Description: crystal structure of the light-driven sodium pump kr2 in the pentameric red form, ph 5.6

PDB Compounds: (C:) Sodium pumping rhodopsin

SCOPe Domain Sequences for d4xtoc_:

Sequence, based on SEQRES records:

>d4xtoc_ f.13.1.0 (C:) automated matches {Dokdonia eikasta [TaxId: 308116]}
elgnanfenfigategfseiayqftshiltlgyavmlagllyfiltiknvdkkfqmsnil
savvmvsaflllyaqaqnwtssftfneevgryfldpsgdlfnngyrylnwlidvpmllfq
ilfvvslttskfssvrnqfwfsgammiitgyigqfyevsnltaflvwgaissafffhilw
vmkkvinegkegispagqkilsniwilfliswtlypgaylmpyltgvdgflysedgvmar
qlvytiadvsskviygvllgnlaitls

Sequence, based on observed residues (ATOM records):

>d4xtoc_ f.13.1.0 (C:) automated matches {Dokdonia eikasta [TaxId: 308116]}
elgnanfenfigategfseiayqftshiltlgyavmlagllyfiltiknvdkkfqmsnil
savvmvsaflllyaqaqnwtssftfneevgryfldpsgdlfnngyrylnwlidvpmllfq
ilfvvslttskfssvrnqfwfsgammiitgyigqfyevsnltaflvwgaissafffhilw
vmkkvinegkegispagqkilsniwilfliswtlypgaylmpyltgflysedgvmarqlv
ytiadvsskviygvllgnlaitls

Timeline for d4xtoc_:

• d4xtoc_ is new in SCOPe 2.08-stable