SCOPe 2.08: Domain d4r1fd2: 4r1f D:266-425

Lineage for d4r1fd2 (4r1f D:266-425)

1. Root: SCOPe 2.08

2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)

3. Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
   core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover

4. Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)

5. Family d.14.1.0: automated matches [191504] (1 protein)
   not a true family

6. Protein automated matches [190826] (23 species)
   not a true protein

7. Species Human (Homo sapiens) [TaxId:9606] [189350] (13 PDB entries)

8. Domain d4r1fd2: 4r1f D:266-425 [414229]
   Other proteins in same PDB: d4r1fa1, d4r1fb1, d4r1fc1, d4r1fd1
   automated match to d7l6sa2
   protein/DNA complex; complexed with adp, gol, mg, so4

Details for d4r1fd2

PDB Entry: 4r1f, 2.51 Å

PDB Description: Re-refined Human DNA topoisomerase IIa (ATPase and transducer domains) in complex with ADP and SO4

PDB Compounds: (D:) DNA topoisomerase 2-alpha

SCOPe Domain Sequences for d4r1fd2:

Sequence, based on SEQRES records:

>d4r1fd2 d.14.1.0 (D:266-425) automated matches {Human (Homo sapiens) [TaxId: 9606]}
gfrsyvdmylkdkldetgnslkviheqvnhrwevcltmsekgfqqisfvnsiatskggrh
vdyvadqivtklvdvvkkknkggvavkahqvknhmwifvnalienptfdsqtkenmtlqp
ksfgstcqlsekfikaaigcgivesilnwvkfkaqvqlnk

Sequence, based on observed residues (ATOM records):

>d4r1fd2 d.14.1.0 (D:266-425) automated matches {Human (Homo sapiens) [TaxId: 9606]}
gfrsyvdmylkkviheqvnhrwevcltmsekgfqqisfvnsiatskggrhvdyvadqivt
klvdvvkkahqvknhmwifvnalienptfdsqtkenmtlqpksfgstcqlsekfikaaig
cgivwvkfkaqvqlnk

Timeline for d4r1fd2:

• d4r1fd2 is new in SCOPe 2.08-stable