SCOPe 2.08: Domain d4p2nd_: 4p2n D:

Lineage for d4p2nd_ (4p2n D:)

1. Root: SCOPe 2.08

2. Class b: All beta proteins [48724] (180 folds)

3. Fold b.121: Nucleoplasmin-like/VP (viral coat and capsid proteins) [88632] (7 superfamilies)
   sandwich; 8 strands in 2 sheets; jelly-roll; some members can have additional 1-2 strands
   characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies

4. Superfamily b.121.4: Positive stranded ssRNA viruses [88633] (10 families)

5. Family b.121.4.0: automated matches [191569] (1 protein)
   not a true family

6. Protein automated matches [190988] (51 species)
   not a true protein

7. Species Norovirus hu/gi.7/tch-060/usa/2003 [TaxId:1097017] [419920] (6 PDB entries)

8. Domain d4p2nd_: 4p2n D: [414138]
   automated match to d5or7a_

Details for d4p2nd_

PDB Entry: 4p2n, 1.7 Å

PDB Description: structure of the p domain from a gi.7 norovirus variant in complex with lex hbga

PDB Compounds: (D:) Major capsid protein

SCOPe Domain Sequences for d4p2nd_:

Sequence, based on SEQRES records:

>d4p2nd_ b.121.4.0 (D:) automated matches {Norovirus hu/gi.7/tch-060/usa/2003 [TaxId: 1097017]}
rqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqva
rirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvdqnlsgdpm
srldvkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsygstvte
sthlappifppgfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaall
hyvdpdthrnlgefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

Sequence, based on observed residues (ATOM records):

>d4p2nd_ b.121.4.0 (D:) automated matches {Norovirus hu/gi.7/tch-060/usa/2003 [TaxId: 1097017]}
rqltvpniplnnlansrvpaminkmtvstdqnqvvqfqngrctlegqllgttpvsasqva
rirgkvfstasgkglnlteldgtpyhafespaplgfpdigacdwhvstfkvsgdpmsrld
vkqnapfaphlgsieftsdqdptgdqlgtlawvspstsgarvdpwkipsythlappifpp
gfgeaivyfmsdfpivsgntaqvpctlpqefvshfveqqapvrgeaallhyvdpdthrnl
gefklypdgfitcvpntgggpqnlptngvfvfsswvsryyqlkpvg

Timeline for d4p2nd_:

• d4p2nd_ is new in SCOPe 2.08-stable